miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18641 5' -51.1 NC_004682.1 + 35964 0.66 0.917018
Target:  5'- ---aCcAGGCGugGUCGAGGcguUCGCGCc -3'
miRNA:   3'- ccuaGcUCUGUugUAGCUCC---AGCGUG- -5'
18641 5' -51.1 NC_004682.1 + 36706 0.66 0.917018
Target:  5'- aGGAUCGGGAgGACGaCGGccuGGaCGCGg -3'
miRNA:   3'- -CCUAGCUCUgUUGUaGCU---CCaGCGUg -5'
18641 5' -51.1 NC_004682.1 + 12814 0.66 0.910526
Target:  5'- cGGcgCuGAGGCAccucgGCAcCGAGGagGCGCu -3'
miRNA:   3'- -CCuaG-CUCUGU-----UGUaGCUCCagCGUG- -5'
18641 5' -51.1 NC_004682.1 + 18442 0.66 0.910526
Target:  5'- cGGAgaacucgcugcUCGucuacGGCGACAgCGGGG-CGCACa -3'
miRNA:   3'- -CCU-----------AGCu----CUGUUGUaGCUCCaGCGUG- -5'
18641 5' -51.1 NC_004682.1 + 41263 0.66 0.906492
Target:  5'- aGGAUgCGAGccagguacgcgucgaACAGCGucuggccggucUCGGGGUCGaCGCc -3'
miRNA:   3'- -CCUA-GCUC---------------UGUUGU-----------AGCUCCAGC-GUG- -5'
18641 5' -51.1 NC_004682.1 + 45310 0.66 0.903745
Target:  5'- ---gCGAGACcgucucGAUGUCGcggcGGUCGCACa -3'
miRNA:   3'- ccuaGCUCUG------UUGUAGCu---CCAGCGUG- -5'
18641 5' -51.1 NC_004682.1 + 34536 0.66 0.89668
Target:  5'- cGGAgcaGGGAgAGCGUCuGGGcUGCACg -3'
miRNA:   3'- -CCUag-CUCUgUUGUAGcUCCaGCGUG- -5'
18641 5' -51.1 NC_004682.1 + 3230 0.66 0.889333
Target:  5'- cGGcgCGgcacaGGGCGACAUCGGcGG-CGCAg -3'
miRNA:   3'- -CCuaGC-----UCUGUUGUAGCU-CCaGCGUg -5'
18641 5' -51.1 NC_004682.1 + 35264 0.67 0.88171
Target:  5'- --cUUGAGGguCAACG-CGAGGUCGuCGCg -3'
miRNA:   3'- ccuAGCUCU--GUUGUaGCUCCAGC-GUG- -5'
18641 5' -51.1 NC_004682.1 + 7656 0.67 0.857246
Target:  5'- aGGAgguAGGCAugGcCGAGGUCGC-Ca -3'
miRNA:   3'- -CCUagcUCUGUugUaGCUCCAGCGuG- -5'
18641 5' -51.1 NC_004682.1 + 38636 0.67 0.857246
Target:  5'- cGGAUCGAGACGACAgcccaGcCGUGCu -3'
miRNA:   3'- -CCUAGCUCUGUUGUagcucCaGCGUG- -5'
18641 5' -51.1 NC_004682.1 + 7567 0.67 0.848584
Target:  5'- ---cCGAGGCcggcgggcGCAUCGAGGcCGCAa -3'
miRNA:   3'- ccuaGCUCUGu-------UGUAGCUCCaGCGUg -5'
18641 5' -51.1 NC_004682.1 + 577 0.67 0.847705
Target:  5'- aGGAUCGAGugAguacccagagccaGCGguaCGAGcGgagCGCACa -3'
miRNA:   3'- -CCUAGCUCugU-------------UGUa--GCUC-Ca--GCGUG- -5'
18641 5' -51.1 NC_004682.1 + 49261 0.68 0.839682
Target:  5'- cGAUcCGGGAUGGCGUCGGcGUCGguCg -3'
miRNA:   3'- cCUA-GCUCUGUUGUAGCUcCAGCguG- -5'
18641 5' -51.1 NC_004682.1 + 41482 0.68 0.83878
Target:  5'- gGGAUCGGGAUGACcgggaccAUCuccAGGUUGUGCg -3'
miRNA:   3'- -CCUAGCUCUGUUG-------UAGc--UCCAGCGUG- -5'
18641 5' -51.1 NC_004682.1 + 7958 0.68 0.821199
Target:  5'- ---cCGAGAgGGCAUCGAGaUCGCcCg -3'
miRNA:   3'- ccuaGCUCUgUUGUAGCUCcAGCGuG- -5'
18641 5' -51.1 NC_004682.1 + 9237 0.68 0.821199
Target:  5'- aGAUCGAGGCuuCGaUGAuGUCGUACg -3'
miRNA:   3'- cCUAGCUCUGuuGUaGCUcCAGCGUG- -5'
18641 5' -51.1 NC_004682.1 + 41805 0.68 0.821199
Target:  5'- -cGUCGAcuCGAUGUCGAGGUCGUugGCc -3'
miRNA:   3'- ccUAGCUcuGUUGUAGCUCCAGCG--UG- -5'
18641 5' -51.1 NC_004682.1 + 44166 0.69 0.781807
Target:  5'- gGGGUCgGAGACGACGacgggaUCGuGGGUCGaguGCa -3'
miRNA:   3'- -CCUAG-CUCUGUUGU------AGC-UCCAGCg--UG- -5'
18641 5' -51.1 NC_004682.1 + 34473 0.69 0.750502
Target:  5'- cGGAaguUCGAGACGGCcagucgaccgucGUUGAGGgCGCGg -3'
miRNA:   3'- -CCU---AGCUCUGUUG------------UAGCUCCaGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.