miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18642 3' -55.8 NC_004682.1 + 28000 0.66 0.641689
Target:  5'- cAGCGC-GGGCUCCGGGaccuuCUuccGggCCGCu -3'
miRNA:   3'- -UCGCGuUCCGAGGCUUc----GA---CaaGGCG- -5'
18642 3' -55.8 NC_004682.1 + 21771 0.66 0.63058
Target:  5'- --gGCAGGacGCUCUGGauGGCUGagCCGCu -3'
miRNA:   3'- ucgCGUUC--CGAGGCU--UCGACaaGGCG- -5'
18642 3' -55.8 NC_004682.1 + 47155 0.66 0.630579
Target:  5'- cGGCGau-GGCUCCGAuguGGCc--UCCGUc -3'
miRNA:   3'- -UCGCguuCCGAGGCU---UCGacaAGGCG- -5'
18642 3' -55.8 NC_004682.1 + 25729 0.67 0.608374
Target:  5'- uGGCG-AGGGCUCCGGuAGC-GgcUCGCc -3'
miRNA:   3'- -UCGCgUUCCGAGGCU-UCGaCaaGGCG- -5'
18642 3' -55.8 NC_004682.1 + 23209 0.67 0.608374
Target:  5'- uGGC-UGAGGCcgUCCGuGAGggGUUCCGCg -3'
miRNA:   3'- -UCGcGUUCCG--AGGC-UUCgaCAAGGCG- -5'
18642 3' -55.8 NC_004682.1 + 35240 0.67 0.597298
Target:  5'- gAGCcaacgGCAGcGGCcCCGAGGCcGUgCCGCc -3'
miRNA:   3'- -UCG-----CGUU-CCGaGGCUUCGaCAaGGCG- -5'
18642 3' -55.8 NC_004682.1 + 46511 0.67 0.597298
Target:  5'- aGGCGCGGcgguaGCUCUuGAGCUGg-CCGCu -3'
miRNA:   3'- -UCGCGUUc----CGAGGcUUCGACaaGGCG- -5'
18642 3' -55.8 NC_004682.1 + 4386 0.67 0.586253
Target:  5'- cGCGuCAAGGC-CCaGGAggacaagguGCUGgagUCCGCu -3'
miRNA:   3'- uCGC-GUUCCGaGG-CUU---------CGACa--AGGCG- -5'
18642 3' -55.8 NC_004682.1 + 25010 0.67 0.586253
Target:  5'- cGGCGC-AGGCUgCUGAugaAGCagGgcaUCCGCu -3'
miRNA:   3'- -UCGCGuUCCGA-GGCU---UCGa-Ca--AGGCG- -5'
18642 3' -55.8 NC_004682.1 + 27748 0.68 0.542544
Target:  5'- cAGCGUucGGGCaaUGAGGCcGUUCCGg -3'
miRNA:   3'- -UCGCGu-UCCGagGCUUCGaCAAGGCg -5'
18642 3' -55.8 NC_004682.1 + 20381 0.68 0.531776
Target:  5'- gAGCGgAGcGGUUCCGggGCagauggucgUGcUCCGUa -3'
miRNA:   3'- -UCGCgUU-CCGAGGCuuCG---------ACaAGGCG- -5'
18642 3' -55.8 NC_004682.1 + 34687 0.68 0.52749
Target:  5'- cGCGCAucgacuucucgauGGCUUCGAgcugggucuugAGCUGU-CUGCg -3'
miRNA:   3'- uCGCGUu------------CCGAGGCU-----------UCGACAaGGCG- -5'
18642 3' -55.8 NC_004682.1 + 50463 0.68 0.499965
Target:  5'- gAGCGCuccGGGCgcucCCGGAGggGagCCGCu -3'
miRNA:   3'- -UCGCGu--UCCGa---GGCUUCgaCaaGGCG- -5'
18642 3' -55.8 NC_004682.1 + 9835 0.69 0.468011
Target:  5'- gAGCGCAAgcacuacGGCaCCG-AGCUGgccaggCCGCu -3'
miRNA:   3'- -UCGCGUU-------CCGaGGCuUCGACaa----GGCG- -5'
18642 3' -55.8 NC_004682.1 + 5135 0.7 0.429364
Target:  5'- uGGCGCGugcugcGGGCaucUCCGAGGCcaaGgcCCGCg -3'
miRNA:   3'- -UCGCGU------UCCG---AGGCUUCGa--CaaGGCG- -5'
18642 3' -55.8 NC_004682.1 + 48735 0.7 0.41976
Target:  5'- gAGCGCGAGGUU-CGAcAGCU--UCUGCg -3'
miRNA:   3'- -UCGCGUUCCGAgGCU-UCGAcaAGGCG- -5'
18642 3' -55.8 NC_004682.1 + 3228 0.7 0.41976
Target:  5'- aAG-GCAAGGuCUCCGAGGCcgGUcgCCaGCg -3'
miRNA:   3'- -UCgCGUUCC-GAGGCUUCGa-CAa-GG-CG- -5'
18642 3' -55.8 NC_004682.1 + 35214 0.7 0.391747
Target:  5'- gAGCGCucGGCUUCccccGGCUGggUCGCg -3'
miRNA:   3'- -UCGCGuuCCGAGGcu--UCGACaaGGCG- -5'
18642 3' -55.8 NC_004682.1 + 18280 0.7 0.391747
Target:  5'- cGCGCAgaGGGUcgUCGGAGCag-UCCGCa -3'
miRNA:   3'- uCGCGU--UCCGa-GGCUUCGacaAGGCG- -5'
18642 3' -55.8 NC_004682.1 + 3560 0.71 0.373761
Target:  5'- uGGCGCuggccGAGGagaUCCGAGGCUugccCCGCg -3'
miRNA:   3'- -UCGCG-----UUCCg--AGGCUUCGAcaa-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.