Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18644 | 3' | -53.6 | NC_004682.1 | + | 21390 | 0.67 | 0.743466 |
Target: 5'- --cAUCGCAUcgGACGGCAuGACCGAgGGc -3' miRNA: 3'- cucUGGUGUG--UUGUCGU-CUGGCUgCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 25284 | 0.67 | 0.73284 |
Target: 5'- -uGGCCcagugGCGCGugAGCGGcCCaGACGGu -3' miRNA: 3'- cuCUGG-----UGUGUugUCGUCuGG-CUGCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 18716 | 0.67 | 0.73284 |
Target: 5'- aAGGCCGCGaaggcagcccucCAGCAGCGcAUCGACGa -3' miRNA: 3'- cUCUGGUGU------------GUUGUCGUcUGGCUGCc -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 17350 | 0.67 | 0.73284 |
Target: 5'- uGGACgGCGCGAUGaagggccucucGCAGACCcucGACGGc -3' miRNA: 3'- cUCUGgUGUGUUGU-----------CGUCUGG---CUGCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 44424 | 0.67 | 0.722109 |
Target: 5'- aGGACCACAUcgggaacgcccgAGCggGGUAGuuGCCGAUGGg -3' miRNA: 3'- cUCUGGUGUG------------UUG--UCGUC--UGGCUGCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 4512 | 0.68 | 0.696005 |
Target: 5'- cGGGGCCGCACGcgcuucgACAGCAacggcuacgcccacGGCCaGAgGGa -3' miRNA: 3'- -CUCUGGUGUGU-------UGUCGU--------------CUGG-CUgCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 1896 | 0.68 | 0.689416 |
Target: 5'- aGGGAcuCCACAuCGACGGCcagguGGCCGACu- -3' miRNA: 3'- -CUCU--GGUGU-GUUGUCGu----CUGGCUGcc -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 24479 | 0.68 | 0.689416 |
Target: 5'- gGAGGCCGCugcgcgcCGACAGgGGAacaGGCGGu -3' miRNA: 3'- -CUCUGGUGu------GUUGUCgUCUgg-CUGCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 482 | 0.68 | 0.67839 |
Target: 5'- aGGGCCGCuucCGGCGGCGcucACCGACGc -3' miRNA: 3'- cUCUGGUGu--GUUGUCGUc--UGGCUGCc -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 41969 | 0.68 | 0.67839 |
Target: 5'- gGGGACCgugACGCcuACGGCgucGGGCCGGCGc -3' miRNA: 3'- -CUCUGG---UGUGu-UGUCG---UCUGGCUGCc -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 12872 | 0.68 | 0.667319 |
Target: 5'- uGAGACaugccgUACGCAACGGCGu-CCGACGu -3' miRNA: 3'- -CUCUG------GUGUGUUGUCGUcuGGCUGCc -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 23624 | 0.68 | 0.666209 |
Target: 5'- aGGGGCCGCagaaaguaucccACAucgcccaGCAGgAGACCGGCGc -3' miRNA: 3'- -CUCUGGUG------------UGU-------UGUCgUCUGGCUGCc -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 135 | 0.68 | 0.656214 |
Target: 5'- -cGACCGC-CGGCA-CGGGCCGGCa- -3' miRNA: 3'- cuCUGGUGuGUUGUcGUCUGGCUGcc -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 20403 | 0.69 | 0.645086 |
Target: 5'- gGAGGCUGCcaAGCAGguGGUCGACGGc -3' miRNA: 3'- -CUCUGGUGugUUGUCguCUGGCUGCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 20941 | 0.69 | 0.645086 |
Target: 5'- cGGAUCgGCGCGuuCGGCAGGuCUGGCGGg -3' miRNA: 3'- cUCUGG-UGUGUu-GUCGUCU-GGCUGCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 33976 | 0.69 | 0.645086 |
Target: 5'- gGAGACCAgcCAgGAggcCAGCcaccAGGCCGAUGGc -3' miRNA: 3'- -CUCUGGU--GUgUU---GUCG----UCUGGCUGCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 31219 | 0.69 | 0.645086 |
Target: 5'- cGAGACCGCcgGCAcCAGCGGgaucagcuucuGCagcaGACGGg -3' miRNA: 3'- -CUCUGGUG--UGUuGUCGUC-----------UGg---CUGCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 42770 | 0.69 | 0.633946 |
Target: 5'- --uGCCACGCG--GGCAGACCGGgcuuCGGu -3' miRNA: 3'- cucUGGUGUGUugUCGUCUGGCU----GCC- -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 48852 | 0.69 | 0.632832 |
Target: 5'- gGGGGCCaaccgccgucguaGCGguACAGCAGACCGccaGCGa -3' miRNA: 3'- -CUCUGG-------------UGUguUGUCGUCUGGC---UGCc -5' |
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18644 | 3' | -53.6 | NC_004682.1 | + | 17698 | 0.69 | 0.622805 |
Target: 5'- -uGACCACgGCGcuGCAGCAGauccaGCCGAUGa -3' miRNA: 3'- cuCUGGUG-UGU--UGUCGUC-----UGGCUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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