miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18645 3' -61.4 NC_004682.1 + 40160 0.66 0.373762
Target:  5'- gGCCCCgaGGUACaCAG-GCCCUCGGg- -3'
miRNA:   3'- -UGGGGg-UCAUGgGUCaUGGGGGCCau -5'
18645 3' -61.4 NC_004682.1 + 37491 0.66 0.348757
Target:  5'- gGCCCCCcg-AUCCAcGUugCCCCaGUGg -3'
miRNA:   3'- -UGGGGGucaUGGGU-CAugGGGGcCAU- -5'
18645 3' -61.4 NC_004682.1 + 44575 0.66 0.348757
Target:  5'- cGCCUCCAG-GCCCAGaGCCCggaGGUc -3'
miRNA:   3'- -UGGGGGUCaUGGGUCaUGGGgg-CCAu -5'
18645 3' -61.4 NC_004682.1 + 133 0.67 0.317312
Target:  5'- gGCaCCCuGUGCCCAGUGCCCUg---- -3'
miRNA:   3'- -UGgGGGuCAUGGGUCAUGGGGgccau -5'
18645 3' -61.4 NC_004682.1 + 232 0.67 0.307562
Target:  5'- -aCCCCAGgcgggguguaccccUACCCGGUACCCCa---- -3'
miRNA:   3'- ugGGGGUC--------------AUGGGUCAUGGGGgccau -5'
18645 3' -61.4 NC_004682.1 + 329 0.67 0.302408
Target:  5'- cACCCCC--UGCCCuGUaggcACCCCCuGUAg -3'
miRNA:   3'- -UGGGGGucAUGGGuCA----UGGGGGcCAU- -5'
18645 3' -61.4 NC_004682.1 + 13447 0.67 0.29516
Target:  5'- gGCCUCgGGaguaccucACCCGGUACgCCCCGGc- -3'
miRNA:   3'- -UGGGGgUCa-------UGGGUCAUG-GGGGCCau -5'
18645 3' -61.4 NC_004682.1 + 31672 0.68 0.26095
Target:  5'- gACCCUucacauCAGUACCgAGguguacCCCCCGGUc -3'
miRNA:   3'- -UGGGG------GUCAUGGgUCau----GGGGGCCAu -5'
18645 3' -61.4 NC_004682.1 + 17416 0.69 0.224241
Target:  5'- cGCgCCCCAGgcgGCUCAGgagGCCCCCa--- -3'
miRNA:   3'- -UG-GGGGUCa--UGGGUCa--UGGGGGccau -5'
18645 3' -61.4 NC_004682.1 + 35 0.72 0.135855
Target:  5'- uACCCCCcuggGGUACCUGGcaUACCCCCGa-- -3'
miRNA:   3'- -UGGGGG----UCAUGGGUC--AUGGGGGCcau -5'
18645 3' -61.4 NC_004682.1 + 30415 0.73 0.115389
Target:  5'- aGCCCCCAGgGCCUAGUccauGCCCgUGGg- -3'
miRNA:   3'- -UGGGGGUCaUGGGUCA----UGGGgGCCau -5'
18645 3' -61.4 NC_004682.1 + 285 1.06 0.000373
Target:  5'- uACCCCCAGUACCCAGUACCCCCGGUAg -3'
miRNA:   3'- -UGGGGGUCAUGGGUCAUGGGGGCCAU- -5'
18645 3' -61.4 NC_004682.1 + 37036 0.68 0.267524
Target:  5'- uGCUgCCAGUugCCAGUuccACCCUugaGGUAg -3'
miRNA:   3'- -UGGgGGUCAugGGUCA---UGGGGg--CCAU- -5'
18645 3' -61.4 NC_004682.1 + 44735 0.67 0.302408
Target:  5'- cGCCgCCGGUGgCCAcGUACUCCCcGUGg -3'
miRNA:   3'- -UGGgGGUCAUgGGU-CAUGGGGGcCAU- -5'
18645 3' -61.4 NC_004682.1 + 12617 0.67 0.320358
Target:  5'- uCCCuugacagagaacgggCCGGggGCCUAGaGCCCCCGGUc -3'
miRNA:   3'- uGGG---------------GGUCa-UGGGUCaUGGGGGCCAu -5'
18645 3' -61.4 NC_004682.1 + 7736 0.66 0.365294
Target:  5'- gAUCCCCGGUGCCC-GU-CgCCUGGc- -3'
miRNA:   3'- -UGGGGGUCAUGGGuCAuGgGGGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.