Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18645 | 5' | -61.6 | NC_004682.1 | + | 124 | 0.72 | 0.151993 |
Target: 5'- cCCCGUCUcGGCACCCUgUGCCCaGUGc -3' miRNA: 3'- -GGGUGGA-CCGUGGGGgACGGGaCAUc -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 189 | 0.66 | 0.348304 |
Target: 5'- aCC-CCUGcCugCaCCCUGCCCUGc-- -3' miRNA: 3'- gGGuGGACcGugG-GGGACGGGACauc -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 250 | 0.76 | 0.070731 |
Target: 5'- cCCUACCcGGUACCCcaCCUGCCCUGc-- -3' miRNA: 3'- -GGGUGGaCCGUGGG--GGACGGGACauc -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 275 | 0.67 | 0.30963 |
Target: 5'- gCCUACCcGGUACCCCCaguaCCCaGUAc -3' miRNA: 3'- -GGGUGGaCCGUGGGGGac--GGGaCAUc -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 319 | 1.1 | 0.000174 |
Target: 5'- cCCCACCUGGCACCCCCUGCCCUGUAGg -3' miRNA: 3'- -GGGUGGACCGUGGGGGACGGGACAUC- -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 362 | 0.74 | 0.101329 |
Target: 5'- cCCCugUagGGCACCCCCUGCacCCUGc-- -3' miRNA: 3'- -GGGugGa-CCGUGGGGGACG--GGACauc -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 6904 | 0.66 | 0.373111 |
Target: 5'- gCUCACCgagGGCAUCgCaaugGCCCUGgcGa -3' miRNA: 3'- -GGGUGGa--CCGUGGgGga--CGGGACauC- -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 8083 | 0.69 | 0.230394 |
Target: 5'- gCCCGCgUGGCACgUCCUGaCCCa---- -3' miRNA: 3'- -GGGUGgACCGUGgGGGAC-GGGacauc -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 8581 | 0.69 | 0.236286 |
Target: 5'- aCCGCgCUGGCuACCCCg-GCCCcGUGa -3' miRNA: 3'- gGGUG-GACCG-UGGGGgaCGGGaCAUc -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 12116 | 0.66 | 0.373111 |
Target: 5'- gCCUACCUGGCggucaacaACgCCCUGUcgcuCCUGg-- -3' miRNA: 3'- -GGGUGGACCG--------UGgGGGACG----GGACauc -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 13460 | 0.74 | 0.10999 |
Target: 5'- cCUCACCcGGUACgCCCCgGCCCUGg-- -3' miRNA: 3'- -GGGUGGaCCGUG-GGGGaCGGGACauc -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 17778 | 0.68 | 0.274317 |
Target: 5'- aCCaACCUGGCACCgcacauCCCgGCCCUc--- -3' miRNA: 3'- gGG-UGGACCGUGG------GGGaCGGGAcauc -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 19379 | 0.74 | 0.10999 |
Target: 5'- gCCCACCUGGUggACCCCagGCCCUucaaggaagGUGGc -3' miRNA: 3'- -GGGUGGACCG--UGGGGgaCGGGA---------CAUC- -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 35370 | 0.66 | 0.381643 |
Target: 5'- aUCCACCagGGCAgCCgCCCaGCCCUcGcGGg -3' miRNA: 3'- -GGGUGGa-CCGU-GG-GGGaCGGGA-CaUC- -5' |
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18645 | 5' | -61.6 | NC_004682.1 | + | 48248 | 0.68 | 0.267653 |
Target: 5'- gCCugCUGGacccugugGCCCCUgaaUGCCCUGcGGg -3' miRNA: 3'- gGGugGACCg-------UGGGGG---ACGGGACaUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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