Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18646 | 3' | -54.9 | NC_004682.1 | + | 392 | 1.12 | 0.000678 |
Target: 5'- cGGAGCGCUCCCCUUCCAAUAGACCGGc -3' miRNA: 3'- -CCUCGCGAGGGGAAGGUUAUCUGGCC- -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 5374 | 0.74 | 0.316559 |
Target: 5'- -cAGCGCUCCUggUCCAggGGACCGu -3' miRNA: 3'- ccUCGCGAGGGgaAGGUuaUCUGGCc -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 13654 | 0.73 | 0.332382 |
Target: 5'- aGGAGCGCgggaaCCgCaUCCGGUAGACCu- -3' miRNA: 3'- -CCUCGCGa----GGgGaAGGUUAUCUGGcc -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 5558 | 0.7 | 0.478738 |
Target: 5'- cGGGCGCUCgaCCgUCCAGUaccAGGCCGc -3' miRNA: 3'- cCUCGCGAGg-GGaAGGUUA---UCUGGCc -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 30249 | 0.69 | 0.552 |
Target: 5'- cGGAucaGCGcCUCCCCggUCAcgucgcgagacGUGGACUGGa -3' miRNA: 3'- -CCU---CGC-GAGGGGaaGGU-----------UAUCUGGCC- -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 2247 | 0.69 | 0.552 |
Target: 5'- gGGAacccGUGuCUCCCUUggggCCuuGUGGACCGGu -3' miRNA: 3'- -CCU----CGC-GAGGGGAa---GGu-UAUCUGGCC- -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 20011 | 0.69 | 0.562772 |
Target: 5'- uGGAgGCGCUCCCgagCaucgGGGCCGGc -3' miRNA: 3'- -CCU-CGCGAGGGgaaGguuaUCUGGCC- -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 1079 | 0.68 | 0.606337 |
Target: 5'- cGGAcaGCGCUCCaCUUCCucGAUGGGCUc- -3' miRNA: 3'- -CCU--CGCGAGGgGAAGG--UUAUCUGGcc -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 25651 | 0.67 | 0.683043 |
Target: 5'- cGGGCGCUCCaCUggggUCCGGguaccaACCGGc -3' miRNA: 3'- cCUCGCGAGG-GGa---AGGUUauc---UGGCC- -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 37532 | 0.67 | 0.693892 |
Target: 5'- -cAGCGgUgCCCUugcUCCAccGGGCCGGc -3' miRNA: 3'- ccUCGCgAgGGGA---AGGUuaUCUGGCC- -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 15701 | 0.67 | 0.704681 |
Target: 5'- cGAGCGCUCggCUUCCccc-GGCUGGg -3' miRNA: 3'- cCUCGCGAGggGAAGGuuauCUGGCC- -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 6523 | 0.66 | 0.726036 |
Target: 5'- gGGAGCgaaGCUCCCUggcaccgUCCAu--GAUCGa -3' miRNA: 3'- -CCUCG---CGAGGGGa------AGGUuauCUGGCc -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 43905 | 0.66 | 0.73658 |
Target: 5'- uGGAcuGC-CUCCCCUgcgggagCCAGgcGGCUGGc -3' miRNA: 3'- -CCU--CGcGAGGGGAa------GGUUauCUGGCC- -5' |
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18646 | 3' | -54.9 | NC_004682.1 | + | 50055 | 0.66 | 0.73658 |
Target: 5'- aGGAGCGC-CaCCUUCCcgAAUucucaGCCGGg -3' miRNA: 3'- -CCUCGCGaGgGGAAGG--UUAuc---UGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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