miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18646 5' -49.1 NC_004682.1 + 38566 0.66 0.963702
Target:  5'- uGGCCGGUCAccggccugcgucaugUACUUGcCAU---GCCc -3'
miRNA:   3'- -CCGGCCAGU---------------AUGAACuGUAucuUGGc -5'
18646 5' -49.1 NC_004682.1 + 26370 0.66 0.953889
Target:  5'- gGGUCGGcCAcUGCggGGCcuGUGGAGCCu -3'
miRNA:   3'- -CCGGCCaGU-AUGaaCUG--UAUCUUGGc -5'
18646 5' -49.1 NC_004682.1 + 41742 0.67 0.944455
Target:  5'- aGCCGGUCAggaucGACAgcgaccgggAGAGCUGg -3'
miRNA:   3'- cCGGCCAGUaugaaCUGUa--------UCUUGGC- -5'
18646 5' -49.1 NC_004682.1 + 15987 0.67 0.939297
Target:  5'- aGGCCGGcUCAUuc---GCAUGGAugGCCGc -3'
miRNA:   3'- -CCGGCC-AGUAugaacUGUAUCU--UGGC- -5'
18646 5' -49.1 NC_004682.1 + 50411 0.67 0.939297
Target:  5'- --gCGGaUCGcaggACUUGACAgAGAACCGa -3'
miRNA:   3'- ccgGCC-AGUa---UGAACUGUaUCUUGGC- -5'
18646 5' -49.1 NC_004682.1 + 33705 0.68 0.915667
Target:  5'- cGuuGGUCAc-CUUGGCG-GGAGCCGc -3'
miRNA:   3'- cCggCCAGUauGAACUGUaUCUUGGC- -5'
18646 5' -49.1 NC_004682.1 + 5750 0.69 0.887274
Target:  5'- -cCCGGUCGUuCaUGGCcgAGGACCa -3'
miRNA:   3'- ccGGCCAGUAuGaACUGuaUCUUGGc -5'
18646 5' -49.1 NC_004682.1 + 13594 0.69 0.871359
Target:  5'- cGGCCcGUCGUGCc-GACGUAccGGACUGg -3'
miRNA:   3'- -CCGGcCAGUAUGaaCUGUAU--CUUGGC- -5'
18646 5' -49.1 NC_004682.1 + 37413 0.7 0.83636
Target:  5'- aGGCCgcaGGUCGUGgUUGccuuCGUGGAuGCCGa -3'
miRNA:   3'- -CCGG---CCAGUAUgAACu---GUAUCU-UGGC- -5'
18646 5' -49.1 NC_004682.1 + 6213 0.7 0.807628
Target:  5'- cGGCCcgccGUCGUACgccuUGGCGUAG-GCCGc -3'
miRNA:   3'- -CCGGc---CAGUAUGa---ACUGUAUCuUGGC- -5'
18646 5' -49.1 NC_004682.1 + 1807 0.71 0.787454
Target:  5'- uGCCGGUCggcGUGCc-GACGUaggacAGAGCCGa -3'
miRNA:   3'- cCGGCCAG---UAUGaaCUGUA-----UCUUGGC- -5'
18646 5' -49.1 NC_004682.1 + 48282 0.75 0.541343
Target:  5'- aGGCCGG-CGUcCUggucgaGACAUGGGACCa -3'
miRNA:   3'- -CCGGCCaGUAuGAa-----CUGUAUCUUGGc -5'
18646 5' -49.1 NC_004682.1 + 426 1.13 0.002347
Target:  5'- gGGCCGGUCAUACUUGACAUAGAACCGg -3'
miRNA:   3'- -CCGGCCAGUAUGAACUGUAUCUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.