miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18647 5' -58.6 NC_004682.1 + 26482 0.67 0.440221
Target:  5'- -cGGCUGGc---CCCGCCgacguucgACCCGGCg -3'
miRNA:   3'- caCUGGCCaguuGGGCGGa-------UGGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 39806 0.67 0.440221
Target:  5'- -cGACCGcGUaUAGCgCGCC-GCCCGAUg -3'
miRNA:   3'- caCUGGC-CA-GUUGgGCGGaUGGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 5409 0.67 0.437361
Target:  5'- gGUGACCGaccccgacguguucGUCAagaACCCGCgUGCgCUGGCc -3'
miRNA:   3'- -CACUGGC--------------CAGU---UGGGCGgAUG-GGCUG- -5'
18647 5' -58.6 NC_004682.1 + 38627 0.68 0.409366
Target:  5'- gGUGACCGGcCAcggcucuacaacacGCUCGCuCUGCUgCGGCa -3'
miRNA:   3'- -CACUGGCCaGU--------------UGGGCG-GAUGG-GCUG- -5'
18647 5' -58.6 NC_004682.1 + 12086 0.68 0.37642
Target:  5'- cUGACCacggcgucgGGUCcGCagggcaaCGCCUACCUGGCg -3'
miRNA:   3'- cACUGG---------CCAGuUGg------GCGGAUGGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 11539 0.69 0.367828
Target:  5'- cUGAaCGG-CAACCCGCUU-CUCGACg -3'
miRNA:   3'- cACUgGCCaGUUGGGCGGAuGGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 11899 0.69 0.358533
Target:  5'- gGUGAUCGGcuugcgcUCGGCCuCGCCgguCCaCGACg -3'
miRNA:   3'- -CACUGGCC-------AGUUGG-GCGGau-GG-GCUG- -5'
18647 5' -58.6 NC_004682.1 + 36331 0.69 0.34287
Target:  5'- aGUGGgacaacgacgcuCCGGUCcuGCCCGCUcagUACCgCGACa -3'
miRNA:   3'- -CACU------------GGCCAGu-UGGGCGG---AUGG-GCUG- -5'
18647 5' -58.6 NC_004682.1 + 3257 0.69 0.326921
Target:  5'- -gGACgCGGUUgcccgcgcccuGGCCCGCCguggUGCCCGAg -3'
miRNA:   3'- caCUG-GCCAG-----------UUGGGCGG----AUGGGCUg -5'
18647 5' -58.6 NC_004682.1 + 31002 0.69 0.326138
Target:  5'- -cGACCGGUugaucaaggagggCGACCCGCUcGCCgaGGCg -3'
miRNA:   3'- caCUGGCCA-------------GUUGGGCGGaUGGg-CUG- -5'
18647 5' -58.6 NC_004682.1 + 3754 0.69 0.326138
Target:  5'- cGUGG-CGGUCAGCUCGCCUucgguguACUCGGu -3'
miRNA:   3'- -CACUgGCCAGUUGGGCGGA-------UGGGCUg -5'
18647 5' -58.6 NC_004682.1 + 24774 0.7 0.30702
Target:  5'- -cGACUGuGUCGaagaaguucgagaacACCUGCUUACCCGAg -3'
miRNA:   3'- caCUGGC-CAGU---------------UGGGCGGAUGGGCUg -5'
18647 5' -58.6 NC_004682.1 + 23962 0.7 0.289485
Target:  5'- uGUGGCCGGU--GCCCGUCagGCCCa-- -3'
miRNA:   3'- -CACUGGCCAguUGGGCGGa-UGGGcug -5'
18647 5' -58.6 NC_004682.1 + 40752 0.7 0.289485
Target:  5'- -gGACCGGcCAGCCCGaCUGgCgGGCa -3'
miRNA:   3'- caCUGGCCaGUUGGGCgGAUgGgCUG- -5'
18647 5' -58.6 NC_004682.1 + 38564 0.71 0.268684
Target:  5'- cGUGGCCGGUC-ACCgGCCUGCgUCa-- -3'
miRNA:   3'- -CACUGGCCAGuUGGgCGGAUG-GGcug -5'
18647 5' -58.6 NC_004682.1 + 30386 0.71 0.268012
Target:  5'- --uGCCGGUaGACCCcucacggGCCUACUCGGCg -3'
miRNA:   3'- cacUGGCCAgUUGGG-------CGGAUGGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 7907 0.71 0.255497
Target:  5'- --uGCCGGugUCGA-CCGCCuUGCCCGACa -3'
miRNA:   3'- cacUGGCC--AGUUgGGCGG-AUGGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 4891 0.72 0.219109
Target:  5'- -gGGCuCGGUgAGCCCGCgCUACUCGGg -3'
miRNA:   3'- caCUG-GCCAgUUGGGCG-GAUGGGCUg -5'
18647 5' -58.6 NC_004682.1 + 41333 0.82 0.043942
Target:  5'- gGUGGCCGGUCgGACCCGUCcggGCUCGACu -3'
miRNA:   3'- -CACUGGCCAG-UUGGGCGGa--UGGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 552 1.1 0.000395
Target:  5'- aGUGACCGGUCAACCCGCCUACCCGACg -3'
miRNA:   3'- -CACUGGCCAGUUGGGCGGAUGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.