miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18648 5' -57.6 NC_004682.1 + 39794 0.66 0.546211
Target:  5'- aGugGaaGCCCUcGaCCGCGUAUAGCGc -3'
miRNA:   3'- -UugCggUGGGAcC-GGCGUAUAUCGCc -5'
18648 5' -57.6 NC_004682.1 + 30815 0.66 0.546211
Target:  5'- aGACGCUGCCCagcggcgacUGGCUG-GUGcGGCGGu -3'
miRNA:   3'- -UUGCGGUGGG---------ACCGGCgUAUaUCGCC- -5'
18648 5' -57.6 NC_004682.1 + 45621 0.66 0.546211
Target:  5'- cACGCCgGCCCcGG-CGCA---GGCGGg -3'
miRNA:   3'- uUGCGG-UGGGaCCgGCGUauaUCGCC- -5'
18648 5' -57.6 NC_004682.1 + 18091 0.66 0.514358
Target:  5'- cAACGCCACCgauggUGGCUGCcgccugAGCGa -3'
miRNA:   3'- -UUGCGGUGGg----ACCGGCGuaua--UCGCc -5'
18648 5' -57.6 NC_004682.1 + 1586 0.67 0.503906
Target:  5'- cGACGCCAUCCcGGaUCGCAccaAGUGGc -3'
miRNA:   3'- -UUGCGGUGGGaCC-GGCGUauaUCGCC- -5'
18648 5' -57.6 NC_004682.1 + 25279 0.67 0.503906
Target:  5'- cGGCGUgGCCCagUGG-CGCGUG-AGCGGc -3'
miRNA:   3'- -UUGCGgUGGG--ACCgGCGUAUaUCGCC- -5'
18648 5' -57.6 NC_004682.1 + 30726 0.67 0.493547
Target:  5'- gAACuCCGCguCCUGGCCGCGcUGUcgGGCGa -3'
miRNA:   3'- -UUGcGGUG--GGACCGGCGU-AUA--UCGCc -5'
18648 5' -57.6 NC_004682.1 + 28696 0.67 0.463083
Target:  5'- cGAUGCCGCCCacucGCgGCGgc-GGCGGg -3'
miRNA:   3'- -UUGCGGUGGGac--CGgCGUauaUCGCC- -5'
18648 5' -57.6 NC_004682.1 + 6200 0.67 0.453148
Target:  5'- uACGCCuugGCgUaGGCCGCGU--AGCGGg -3'
miRNA:   3'- uUGCGG---UGgGaCCGGCGUAuaUCGCC- -5'
18648 5' -57.6 NC_004682.1 + 37318 0.67 0.453148
Target:  5'- --gGCCACCgUGGCgGCAUccGGCu- -3'
miRNA:   3'- uugCGGUGGgACCGgCGUAuaUCGcc -5'
18648 5' -57.6 NC_004682.1 + 1974 0.67 0.453148
Target:  5'- --gGCCA-CCUGGCCGUcgAU-GUGGa -3'
miRNA:   3'- uugCGGUgGGACCGGCGuaUAuCGCC- -5'
18648 5' -57.6 NC_004682.1 + 16919 0.68 0.44333
Target:  5'- --aGCCACCa-GGCCG---AUGGCGGg -3'
miRNA:   3'- uugCGGUGGgaCCGGCguaUAUCGCC- -5'
18648 5' -57.6 NC_004682.1 + 12883 0.68 0.433633
Target:  5'- --aGCCGCUcgCUGGCgGCGUcgGGgGGa -3'
miRNA:   3'- uugCGGUGG--GACCGgCGUAuaUCgCC- -5'
18648 5' -57.6 NC_004682.1 + 3257 0.68 0.433633
Target:  5'- gGACGCgguugcccgCGCCCUGGCCcGcCGUGgugcccgaguUGGCGGc -3'
miRNA:   3'- -UUGCG---------GUGGGACCGG-C-GUAU----------AUCGCC- -5'
18648 5' -57.6 NC_004682.1 + 37444 0.68 0.414616
Target:  5'- uACGCCccgGCCCUGGCUGaGUAcgAGgGGu -3'
miRNA:   3'- uUGCGG---UGGGACCGGCgUAUa-UCgCC- -5'
18648 5' -57.6 NC_004682.1 + 24578 0.68 0.39612
Target:  5'- cGCGCCGaCCUGGCUGaugccAGCGGu -3'
miRNA:   3'- uUGCGGUgGGACCGGCguauaUCGCC- -5'
18648 5' -57.6 NC_004682.1 + 37250 0.69 0.369393
Target:  5'- gGAUGCCGCCacggUGGCCGUg---GGUGGu -3'
miRNA:   3'- -UUGCGGUGGg---ACCGGCGuauaUCGCC- -5'
18648 5' -57.6 NC_004682.1 + 43528 0.69 0.352274
Target:  5'- cAGCGUUGCCCUGGCCgagaccuacgGCAUcgAGCc- -3'
miRNA:   3'- -UUGCGGUGGGACCGG----------CGUAuaUCGcc -5'
18648 5' -57.6 NC_004682.1 + 18205 0.71 0.289531
Target:  5'- -cUGCCGCCUUGGCCGCgAUGUccgacGCGc -3'
miRNA:   3'- uuGCGGUGGGACCGGCG-UAUAu----CGCc -5'
18648 5' -57.6 NC_004682.1 + 6009 0.71 0.282335
Target:  5'- cAGCGCCGCCCUuGCCGUcgAgcuGCuGGa -3'
miRNA:   3'- -UUGCGGUGGGAcCGGCGuaUau-CG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.