miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18649 5' -51.4 NC_004682.1 + 3884 0.66 0.900504
Target:  5'- uGAGCagaGGgacguaGACGACCCUCGgaUUCg -3'
miRNA:   3'- -CUCGaa-CCaaag--CUGCUGGGAGU--AGG- -5'
18649 5' -51.4 NC_004682.1 + 422 0.66 0.893292
Target:  5'- -cGCUUGGg---GGCGGCuCCUCGgagggCCg -3'
miRNA:   3'- cuCGAACCaaagCUGCUG-GGAGUa----GG- -5'
18649 5' -51.4 NC_004682.1 + 21351 0.66 0.885799
Target:  5'- cGGCUccUGGc--UGACGGgCUUCAUCCg -3'
miRNA:   3'- cUCGA--ACCaaaGCUGCUgGGAGUAGG- -5'
18649 5' -51.4 NC_004682.1 + 31776 0.66 0.884267
Target:  5'- cGGGC-UGGacaucuacagCGACGACuuccguugccgCCUCGUCCa -3'
miRNA:   3'- -CUCGaACCaaa-------GCUGCUG-----------GGAGUAGG- -5'
18649 5' -51.4 NC_004682.1 + 15330 0.66 0.869996
Target:  5'- gGAGC-UGGgaggCGACGACgCCgUCGugcUCCg -3'
miRNA:   3'- -CUCGaACCaaa-GCUGCUG-GG-AGU---AGG- -5'
18649 5' -51.4 NC_004682.1 + 6643 0.66 0.869996
Target:  5'- cGAGCcugUGGUgcaGGCuGCCCUUcggGUCCa -3'
miRNA:   3'- -CUCGa--ACCAaagCUGcUGGGAG---UAGG- -5'
18649 5' -51.4 NC_004682.1 + 39517 0.67 0.853146
Target:  5'- -cGCUUGGUggUGAUu-CCCUCggCCa -3'
miRNA:   3'- cuCGAACCAaaGCUGcuGGGAGuaGG- -5'
18649 5' -51.4 NC_004682.1 + 41054 0.67 0.835317
Target:  5'- cGGGCUguUGGggUCGAUG-CUCUucugCGUCCa -3'
miRNA:   3'- -CUCGA--ACCaaAGCUGCuGGGA----GUAGG- -5'
18649 5' -51.4 NC_004682.1 + 36426 0.68 0.797027
Target:  5'- cGGaCUUGGUcUCGGCGAa-CUCAUCg -3'
miRNA:   3'- cUC-GAACCAaAGCUGCUggGAGUAGg -5'
18649 5' -51.4 NC_004682.1 + 33303 0.71 0.622534
Target:  5'- gGGGCUgGGUUUCGGCcuGGCCC-CcUCCc -3'
miRNA:   3'- -CUCGAaCCAAAGCUG--CUGGGaGuAGG- -5'
18649 5' -51.4 NC_004682.1 + 43672 0.72 0.588644
Target:  5'- cGAGCUgGGUUUCGAcauCGACCUcgacggagucuUgGUCCg -3'
miRNA:   3'- -CUCGAaCCAAAGCU---GCUGGG-----------AgUAGG- -5'
18649 5' -51.4 NC_004682.1 + 30678 0.72 0.58527
Target:  5'- uGGGCcUGGUagUCGACugaggccaucaauuGGCCCUCGUCg -3'
miRNA:   3'- -CUCGaACCAa-AGCUG--------------CUGGGAGUAGg -5'
18649 5' -51.4 NC_004682.1 + 12037 0.72 0.544037
Target:  5'- uGAGCgcgaUGGccUCGGCGAUCUUgGUCCg -3'
miRNA:   3'- -CUCGa---ACCaaAGCUGCUGGGAgUAGG- -5'
18649 5' -51.4 NC_004682.1 + 974 1.14 0.001147
Target:  5'- cGAGCUUGGUUUCGACGACCCUCAUCCa -3'
miRNA:   3'- -CUCGAACCAAAGCUGCUGGGAGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.