Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1865 | 3' | -53.2 | NC_001347.2 | + | 181428 | 0.66 | 0.992307 |
|
Target: 5'- cGUUCGCGUGCACGcGCCaAAaUCUg- -3' miRNA: 3'- cUAGGUGCACGUGC-CGGcUUaAGAgc -5' |
|||||||
| 1865 | 3' | -53.2 | NC_001347.2 | + | 21602 | 0.67 | 0.985624 |
|
Target: 5'- cGGUCCGaguggcgcagguCGUGCACGucggccaccagcGCCGuggUCUCGg -3' miRNA: 3'- -CUAGGU------------GCACGUGC------------CGGCuuaAGAGC- -5' |
|||||||
| 1865 | 3' | -53.2 | NC_001347.2 | + | 77485 | 0.67 | 0.983871 |
|
Target: 5'- cGUgCAUGUGCAacCGGCCGuc--CUCGg -3' miRNA: 3'- cUAgGUGCACGU--GCCGGCuuaaGAGC- -5' |
|||||||
| 1865 | 3' | -53.2 | NC_001347.2 | + | 131808 | 0.67 | 0.983871 |
|
Target: 5'- uGAUCUugGUGUGCG-CCGugagGUUCUUGc -3' miRNA: 3'- -CUAGGugCACGUGCcGGCu---UAAGAGC- -5' |
|||||||
| 1865 | 3' | -53.2 | NC_001347.2 | + | 30021 | 0.67 | 0.983871 |
|
Target: 5'- --gCCugGcGCucACGGCCGAGUUCg-- -3' miRNA: 3'- cuaGGugCaCG--UGCCGGCUUAAGagc -5' |
|||||||
| 1865 | 3' | -53.2 | NC_001347.2 | + | 121748 | 0.67 | 0.979886 |
|
Target: 5'- cGAUCUAUGUGUACGcGCUGccg-CUCa -3' miRNA: 3'- -CUAGGUGCACGUGC-CGGCuuaaGAGc -5' |
|||||||
| 1865 | 3' | -53.2 | NC_001347.2 | + | 57275 | 0.68 | 0.963564 |
|
Target: 5'- -cUCCAUGUGCGCGcCCGAuUUCa-- -3' miRNA: 3'- cuAGGUGCACGUGCcGGCUuAAGagc -5' |
|||||||
| 1865 | 3' | -53.2 | NC_001347.2 | + | 129992 | 0.69 | 0.956499 |
|
Target: 5'- cGUCCAgGUGCA-GGCUGAggUCgcgCGg -3' miRNA: 3'- cUAGGUgCACGUgCCGGCUuaAGa--GC- -5' |
|||||||
| 1865 | 3' | -53.2 | NC_001347.2 | + | 161812 | 0.69 | 0.948554 |
|
Target: 5'- cGUCUugGcGC-CGGCCGAAgcCUCGc -3' miRNA: 3'- cUAGGugCaCGuGCCGGCUUaaGAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home