miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1865 5' -53.1 NC_001347.2 + 65364 0.66 0.990967
Target:  5'- -cCAGUGUUUUGGacguCGUGgACGgGGGu -3'
miRNA:   3'- guGUUACAGAACCg---GCACgUGCgUCC- -5'
1865 5' -53.1 NC_001347.2 + 203430 0.66 0.98973
Target:  5'- uCACGcccGUGgugUGGUCG-GCACGCuGGg -3'
miRNA:   3'- -GUGU---UACagaACCGGCaCGUGCGuCC- -5'
1865 5' -53.1 NC_001347.2 + 92100 0.66 0.988364
Target:  5'- aCACAGg--UUUGGCgccCGUagGCGCGCGGGu -3'
miRNA:   3'- -GUGUUacaGAACCG---GCA--CGUGCGUCC- -5'
1865 5' -53.1 NC_001347.2 + 64412 0.67 0.983411
Target:  5'- aCAcCGAUGUCga-GCCG-GCGgGCGGGu -3'
miRNA:   3'- -GU-GUUACAGaacCGGCaCGUgCGUCC- -5'
1865 5' -53.1 NC_001347.2 + 60861 0.67 0.974517
Target:  5'- gCACAcUGgcagacCUUGGUCGacguUGCACGCGGa -3'
miRNA:   3'- -GUGUuACa-----GAACCGGC----ACGUGCGUCc -5'
1865 5' -53.1 NC_001347.2 + 77080 0.68 0.968954
Target:  5'- --aGAUGUCgugcaGGUCGUGCagcgugagGCGCGGGc -3'
miRNA:   3'- gugUUACAGaa---CCGGCACG--------UGCGUCC- -5'
1865 5' -53.1 NC_001347.2 + 205945 0.68 0.968954
Target:  5'- gGCcGUGg--UGGCCGUGCugGgCuGGg -3'
miRNA:   3'- gUGuUACagaACCGGCACGugC-GuCC- -5'
1865 5' -53.1 NC_001347.2 + 57202 0.68 0.96587
Target:  5'- aGCGAgaauucGGCCGUGCACGUGGa -3'
miRNA:   3'- gUGUUacagaaCCGGCACGUGCGUCc -5'
1865 5' -53.1 NC_001347.2 + 89723 0.68 0.962576
Target:  5'- gACGggGUUccgggcGGCgGUGCugGCGGGg -3'
miRNA:   3'- gUGUuaCAGaa----CCGgCACGugCGUCC- -5'
1865 5' -53.1 NC_001347.2 + 38629 0.68 0.962576
Target:  5'- aACGGUGaaUCUUGGCgUGgcGCACGCAGc -3'
miRNA:   3'- gUGUUAC--AGAACCG-GCa-CGUGCGUCc -5'
1865 5' -53.1 NC_001347.2 + 50081 0.68 0.959067
Target:  5'- gAUAGUGUCUauaaaGGCCGUGC-CGCc-- -3'
miRNA:   3'- gUGUUACAGAa----CCGGCACGuGCGucc -5'
1865 5' -53.1 NC_001347.2 + 152509 0.69 0.951387
Target:  5'- gCGCAAuuUGUacgcgcGGCCGUGCA-GCGGGc -3'
miRNA:   3'- -GUGUU--ACAgaa---CCGGCACGUgCGUCC- -5'
1865 5' -53.1 NC_001347.2 + 126712 0.69 0.942796
Target:  5'- uGCAGgccUGUCgugaacuguuuUUGGCCGUGCAauuCGUGGGc -3'
miRNA:   3'- gUGUU---ACAG-----------AACCGGCACGU---GCGUCC- -5'
1865 5' -53.1 NC_001347.2 + 152781 0.69 0.942796
Target:  5'- uCACGGUGcggCgcgUGGCCGaggaguggaaguUGCACGCGGc -3'
miRNA:   3'- -GUGUUACa--Ga--ACCGGC------------ACGUGCGUCc -5'
1865 5' -53.1 NC_001347.2 + 189630 0.69 0.938153
Target:  5'- gACGGUGUUggGGCCGgGgACGgGGGu -3'
miRNA:   3'- gUGUUACAGaaCCGGCaCgUGCgUCC- -5'
1865 5' -53.1 NC_001347.2 + 80880 0.69 0.938153
Target:  5'- uGCGAUGUCUcugaccuggUGGCUGUGCccgACGaCAGc -3'
miRNA:   3'- gUGUUACAGA---------ACCGGCACG---UGC-GUCc -5'
1865 5' -53.1 NC_001347.2 + 65926 0.7 0.933275
Target:  5'- gGCGAUGagCgccgGGCCGUGCugacgucCGUAGGg -3'
miRNA:   3'- gUGUUACa-Gaa--CCGGCACGu------GCGUCC- -5'
1865 5' -53.1 NC_001347.2 + 9273 0.7 0.928161
Target:  5'- gUACAGcGUCagauuUUGGCgCGUGCACGCGa- -3'
miRNA:   3'- -GUGUUaCAG-----AACCG-GCACGUGCGUcc -5'
1865 5' -53.1 NC_001347.2 + 230256 0.7 0.917225
Target:  5'- gGCGGUGUUUUGGgUGUGUcgggGCGCGGc -3'
miRNA:   3'- gUGUUACAGAACCgGCACG----UGCGUCc -5'
1865 5' -53.1 NC_001347.2 + 776 0.7 0.911404
Target:  5'- gGCGGUGUUUUGGgUGUGUcgggGCGCGGcGg -3'
miRNA:   3'- gUGUUACAGAACCgGCACG----UGCGUC-C- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.