Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1865 | 5' | -53.1 | NC_001347.2 | + | 155579 | 0.76 | 0.642396 |
Target: 5'- gGCGAUgGUCaUGGCCGUGCGCGaagugAGGc -3' miRNA: 3'- gUGUUA-CAGaACCGGCACGUGCg----UCC- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 77446 | 0.75 | 0.682926 |
Target: 5'- gCACGAUGUCguggUUGGCggCGUGCA-GCAGGu -3' miRNA: 3'- -GUGUUACAG----AACCG--GCACGUgCGUCC- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 709 | 0.72 | 0.85667 |
Target: 5'- gGguGUGUCggGGgUGUGUugGCAGGg -3' miRNA: 3'- gUguUACAGaaCCgGCACGugCGUCC- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 230188 | 0.72 | 0.85667 |
Target: 5'- gGguGUGUCggGGgUGUGUugGCAGGg -3' miRNA: 3'- gUguUACAGaaCCgGCACGugCGUCC- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 61559 | 0.71 | 0.892546 |
Target: 5'- cCGCuuUGUCcgUGGcCCGUGCcCGCAGc -3' miRNA: 3'- -GUGuuACAGa-ACC-GGCACGuGCGUCc -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 776 | 0.7 | 0.911404 |
Target: 5'- gGCGGUGUUUUGGgUGUGUcgggGCGCGGcGg -3' miRNA: 3'- gUGUUACAGAACCgGCACG----UGCGUC-C- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 230256 | 0.7 | 0.917225 |
Target: 5'- gGCGGUGUUUUGGgUGUGUcgggGCGCGGc -3' miRNA: 3'- gUGUUACAGAACCgGCACG----UGCGUCc -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 9273 | 0.7 | 0.928161 |
Target: 5'- gUACAGcGUCagauuUUGGCgCGUGCACGCGa- -3' miRNA: 3'- -GUGUUaCAG-----AACCG-GCACGUGCGUcc -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 65926 | 0.7 | 0.933275 |
Target: 5'- gGCGAUGagCgccgGGCCGUGCugacgucCGUAGGg -3' miRNA: 3'- gUGUUACa-Gaa--CCGGCACGu------GCGUCC- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 189630 | 0.69 | 0.938153 |
Target: 5'- gACGGUGUUggGGCCGgGgACGgGGGu -3' miRNA: 3'- gUGUUACAGaaCCGGCaCgUGCgUCC- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 80880 | 0.69 | 0.938153 |
Target: 5'- uGCGAUGUCUcugaccuggUGGCUGUGCccgACGaCAGc -3' miRNA: 3'- gUGUUACAGA---------ACCGGCACG---UGC-GUCc -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 126712 | 0.69 | 0.942796 |
Target: 5'- uGCAGgccUGUCgugaacuguuuUUGGCCGUGCAauuCGUGGGc -3' miRNA: 3'- gUGUU---ACAG-----------AACCGGCACGU---GCGUCC- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 152781 | 0.69 | 0.942796 |
Target: 5'- uCACGGUGcggCgcgUGGCCGaggaguggaaguUGCACGCGGc -3' miRNA: 3'- -GUGUUACa--Ga--ACCGGC------------ACGUGCGUCc -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 152509 | 0.69 | 0.951387 |
Target: 5'- gCGCAAuuUGUacgcgcGGCCGUGCA-GCGGGc -3' miRNA: 3'- -GUGUU--ACAgaa---CCGGCACGUgCGUCC- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 50081 | 0.68 | 0.959067 |
Target: 5'- gAUAGUGUCUauaaaGGCCGUGC-CGCc-- -3' miRNA: 3'- gUGUUACAGAa----CCGGCACGuGCGucc -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 89723 | 0.68 | 0.962576 |
Target: 5'- gACGggGUUccgggcGGCgGUGCugGCGGGg -3' miRNA: 3'- gUGUuaCAGaa----CCGgCACGugCGUCC- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 38629 | 0.68 | 0.962576 |
Target: 5'- aACGGUGaaUCUUGGCgUGgcGCACGCAGc -3' miRNA: 3'- gUGUUAC--AGAACCG-GCa-CGUGCGUCc -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 57202 | 0.68 | 0.96587 |
Target: 5'- aGCGAgaauucGGCCGUGCACGUGGa -3' miRNA: 3'- gUGUUacagaaCCGGCACGUGCGUCc -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 77080 | 0.68 | 0.968954 |
Target: 5'- --aGAUGUCgugcaGGUCGUGCagcgugagGCGCGGGc -3' miRNA: 3'- gugUUACAGaa---CCGGCACG--------UGCGUCC- -5' |
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1865 | 5' | -53.1 | NC_001347.2 | + | 205945 | 0.68 | 0.968954 |
Target: 5'- gGCcGUGg--UGGCCGUGCugGgCuGGg -3' miRNA: 3'- gUGuUACagaACCGGCACGugC-GuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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