Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18650 | 3' | -52.2 | NC_004682.1 | + | 1131 | 1.1 | 0.001658 |
Target: 5'- gUCAGCUACUCACCACCGUCAACUCGAu -3' miRNA: 3'- -AGUCGAUGAGUGGUGGCAGUUGAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 3094 | 0.7 | 0.628466 |
Target: 5'- cCGGCUACccCACCACCG-CGACcaUCGc -3' miRNA: 3'- aGUCGAUGa-GUGGUGGCaGUUG--AGCu -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 3772 | 0.74 | 0.424338 |
Target: 5'- gUCAGCgacgACUC-CCGCCGuggcggUCAGCUCGc -3' miRNA: 3'- -AGUCGa---UGAGuGGUGGC------AGUUGAGCu -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 4473 | 0.67 | 0.79193 |
Target: 5'- gUCAGCUugUCGgCACCG-C-GCUCc- -3' miRNA: 3'- -AGUCGAugAGUgGUGGCaGuUGAGcu -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 5207 | 0.75 | 0.34217 |
Target: 5'- -aGGCcgACUgCACCACCGUCAAC-CGGa -3' miRNA: 3'- agUCGa-UGA-GUGGUGGCAGUUGaGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 6252 | 0.66 | 0.839682 |
Target: 5'- gUCAGCgucguCguaGCCgaaauaGCCGUCGACUCGc -3' miRNA: 3'- -AGUCGau---Gag-UGG------UGGCAGUUGAGCu -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 7190 | 0.66 | 0.839682 |
Target: 5'- gCAGgUACcaGCCGCCGUCGACa--- -3' miRNA: 3'- aGUCgAUGagUGGUGGCAGUUGagcu -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 7266 | 0.75 | 0.368245 |
Target: 5'- cCAGCgUGCUCACCGCCGgggguCUUGAc -3' miRNA: 3'- aGUCG-AUGAGUGGUGGCaguu-GAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 8297 | 0.7 | 0.617166 |
Target: 5'- --cGCgaggACguggaCGCCACCGUCcGCUCGAu -3' miRNA: 3'- aguCGa---UGa----GUGGUGGCAGuUGAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 9124 | 0.66 | 0.86566 |
Target: 5'- gUCGGUg--UgGCCAagCGUCGACUCGAu -3' miRNA: 3'- -AGUCGaugAgUGGUg-GCAGUUGAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 12706 | 0.67 | 0.79193 |
Target: 5'- aCGGCgGCuUCGCgACCGUCGAUgaCGAg -3' miRNA: 3'- aGUCGaUG-AGUGgUGGCAGUUGa-GCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 14809 | 0.74 | 0.423362 |
Target: 5'- cUCGGUg--UCACCACCGUCGaagccgaACUCGGg -3' miRNA: 3'- -AGUCGaugAGUGGUGGCAGU-------UGAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 17076 | 0.67 | 0.780785 |
Target: 5'- -aGGCccUGCUCgaagaccccggagACCGCCGUCuucaucuGCUCGAa -3' miRNA: 3'- agUCG--AUGAG-------------UGGUGGCAGu------UGAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 17799 | 0.66 | 0.86483 |
Target: 5'- cCGGCc-CUCGCCACCGcgaugggUCAgauggcggGCUCGGu -3' miRNA: 3'- aGUCGauGAGUGGUGGC-------AGU--------UGAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 21167 | 0.66 | 0.86566 |
Target: 5'- --cGCaGCUCACCAUCGU-GugUCGGc -3' miRNA: 3'- aguCGaUGAGUGGUGGCAgUugAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 21290 | 0.66 | 0.839682 |
Target: 5'- aCGGCUGCcuggucugggaCAUCAUCGaCAACUCGGg -3' miRNA: 3'- aGUCGAUGa----------GUGGUGGCaGUUGAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 27604 | 0.66 | 0.839682 |
Target: 5'- gUAGCgACUaucaCGCCGCCGUCGAUgacaagCGGc -3' miRNA: 3'- aGUCGaUGA----GUGGUGGCAGUUGa-----GCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 28216 | 0.66 | 0.86566 |
Target: 5'- aUCAGCU-UUCGacaGCCGUCGcaggggGCUCGGg -3' miRNA: 3'- -AGUCGAuGAGUgg-UGGCAGU------UGAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 29053 | 0.67 | 0.821199 |
Target: 5'- -gGGCUGCUgACCAgCCcUCAGUUCGAc -3' miRNA: 3'- agUCGAUGAgUGGU-GGcAGUUGAGCU- -5' |
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18650 | 3' | -52.2 | NC_004682.1 | + | 30471 | 0.66 | 0.848584 |
Target: 5'- cCGGuCUGCUCgGCCACCGUCuugGCa--- -3' miRNA: 3'- aGUC-GAUGAG-UGGUGGCAGu--UGagcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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