miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18651 3' -57.6 NC_004682.1 + 40890 0.66 0.603058
Target:  5'- uGGUCCg--GGCGacccaGUCGCGGCUg-- -3'
miRNA:   3'- -CCAGGagaCCGCgc---CAGCGCUGAagu -5'
18651 3' -57.6 NC_004682.1 + 3710 0.66 0.603058
Target:  5'- aGUCgUCgcugacGGCGaauaCGGUCGCGACUa-- -3'
miRNA:   3'- cCAGgAGa-----CCGC----GCCAGCGCUGAagu -5'
18651 3' -57.6 NC_004682.1 + 20551 0.66 0.601979
Target:  5'- --gCCUCUGGUGCGGcUCuggaacgGCGACa--- -3'
miRNA:   3'- ccaGGAGACCGCGCC-AG-------CGCUGaagu -5'
18651 3' -57.6 NC_004682.1 + 2621 0.67 0.539034
Target:  5'- cGUCCUCgaacGGCaCGGUgCuCGACUUCGu -3'
miRNA:   3'- cCAGGAGa---CCGcGCCA-GcGCUGAAGU- -5'
18651 3' -57.6 NC_004682.1 + 15599 0.67 0.507864
Target:  5'- aGGUCUUCgaGGCGUGGaugaaCGCGACc--- -3'
miRNA:   3'- -CCAGGAGa-CCGCGCCa----GCGCUGaagu -5'
18651 3' -57.6 NC_004682.1 + 8778 0.68 0.467555
Target:  5'- cGcCCUCcgGGUGCGGUUGCG-CUUa- -3'
miRNA:   3'- cCaGGAGa-CCGCGCCAGCGCuGAAgu -5'
18651 3' -57.6 NC_004682.1 + 26822 0.69 0.428959
Target:  5'- aGUCC-CUGGCGCGGgacuugaaGCGG-UUCAg -3'
miRNA:   3'- cCAGGaGACCGCGCCag------CGCUgAAGU- -5'
18651 3' -57.6 NC_004682.1 + 40113 0.69 0.419606
Target:  5'- gGGUCCUUaagguUGGCGUGGUgcuccuugccUGCGGCagCAu -3'
miRNA:   3'- -CCAGGAG-----ACCGCGCCA----------GCGCUGaaGU- -5'
18651 3' -57.6 NC_004682.1 + 31843 0.7 0.35775
Target:  5'- --aCCUCUGGgGCuucCGCGACUUCGu -3'
miRNA:   3'- ccaGGAGACCgCGccaGCGCUGAAGU- -5'
18651 3' -57.6 NC_004682.1 + 20294 0.71 0.310038
Target:  5'- cGUUCUCUGGCGUGGcCGUGAa---- -3'
miRNA:   3'- cCAGGAGACCGCGCCaGCGCUgaagu -5'
18651 3' -57.6 NC_004682.1 + 20580 0.76 0.146234
Target:  5'- uGGUCCUUcggGGCGUGGUCGCuGGCgagCGu -3'
miRNA:   3'- -CCAGGAGa--CCGCGCCAGCG-CUGaa-GU- -5'
18651 3' -57.6 NC_004682.1 + 1408 1.1 0.00048
Target:  5'- uGGUCCUCUGGCGCGGUCGCGACUUCAa -3'
miRNA:   3'- -CCAGGAGACCGCGCCAGCGCUGAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.