miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18652 5' -56.7 NC_004682.1 + 9447 0.66 0.667918
Target:  5'- aCCGACGCagcugCCCGGA-CGCugauGCUGAu -3'
miRNA:   3'- -GGCUGCGgua--GGGCCUaGCG----UGGUUc -5'
18652 5' -56.7 NC_004682.1 + 14755 0.66 0.667918
Target:  5'- gCCGAUGCUGUCCCagccGGUCgGCGuCCAc- -3'
miRNA:   3'- -GGCUGCGGUAGGGc---CUAG-CGU-GGUuc -5'
18652 5' -56.7 NC_004682.1 + 29921 0.66 0.657132
Target:  5'- uCCGGCGCaguUCCUGGAUaccUGCugCu-- -3'
miRNA:   3'- -GGCUGCGgu-AGGGCCUA---GCGugGuuc -5'
18652 5' -56.7 NC_004682.1 + 6427 0.66 0.656052
Target:  5'- cCCGAUGUgGUCCUcGAUCauggacgGUGCCAGGg -3'
miRNA:   3'- -GGCUGCGgUAGGGcCUAG-------CGUGGUUC- -5'
18652 5' -56.7 NC_004682.1 + 13061 0.66 0.624678
Target:  5'- -gGugGCCAggUCCGGGaUGCGCCGc- -3'
miRNA:   3'- ggCugCGGUa-GGGCCUaGCGUGGUuc -5'
18652 5' -56.7 NC_004682.1 + 1719 0.67 0.59228
Target:  5'- cCCcACGCCAa--CGGGUCGcCACCAGa -3'
miRNA:   3'- -GGcUGCGGUaggGCCUAGC-GUGGUUc -5'
18652 5' -56.7 NC_004682.1 + 7566 0.67 0.59228
Target:  5'- uCCGAgGCCGg--CGGG-CGCAUCGAGg -3'
miRNA:   3'- -GGCUgCGGUaggGCCUaGCGUGGUUC- -5'
18652 5' -56.7 NC_004682.1 + 32172 0.67 0.589053
Target:  5'- uUCGACGUgaaccccgcaaccgUGUCUCGGAUCGU-CCGGGg -3'
miRNA:   3'- -GGCUGCG--------------GUAGGGCCUAGCGuGGUUC- -5'
18652 5' -56.7 NC_004682.1 + 804 0.67 0.581535
Target:  5'- aCCGaACGCCAcCCUGGccgcauauagCGgGCCAGGa -3'
miRNA:   3'- -GGC-UGCGGUaGGGCCua--------GCgUGGUUC- -5'
18652 5' -56.7 NC_004682.1 + 40889 0.67 0.581535
Target:  5'- aUCGugGUCGUCCaCGG-UgGCGCuCGGGg -3'
miRNA:   3'- -GGCugCGGUAGG-GCCuAgCGUG-GUUC- -5'
18652 5' -56.7 NC_004682.1 + 30183 0.67 0.581535
Target:  5'- aCCGACGCCAggaucucgUCgUGGAUCgGCagGCgAAGg -3'
miRNA:   3'- -GGCUGCGGU--------AGgGCCUAG-CG--UGgUUC- -5'
18652 5' -56.7 NC_004682.1 + 17259 0.67 0.577247
Target:  5'- uCCGACGCCuucggcuaccugUCCGGGUCGCugaaCAc- -3'
miRNA:   3'- -GGCUGCGGua----------GGGCCUAGCGug--GUuc -5'
18652 5' -56.7 NC_004682.1 + 25747 0.67 0.570829
Target:  5'- cCCGACGCCugcUgCCGGuUgGUACCcGGa -3'
miRNA:   3'- -GGCUGCGGu--AgGGCCuAgCGUGGuUC- -5'
18652 5' -56.7 NC_004682.1 + 35826 0.67 0.560173
Target:  5'- aCGAgCGCUAUcaccucCCCGGugagCGCGCCGAu -3'
miRNA:   3'- gGCU-GCGGUA------GGGCCua--GCGUGGUUc -5'
18652 5' -56.7 NC_004682.1 + 3001 0.67 0.560173
Target:  5'- uCCGACGCggcgucgaCAUCCCGuGGUCaGCAacgCAGGu -3'
miRNA:   3'- -GGCUGCG--------GUAGGGC-CUAG-CGUg--GUUC- -5'
18652 5' -56.7 NC_004682.1 + 11996 0.68 0.549572
Target:  5'- gCGGCuGCCAUCCaCGGcAUCGacaaGCCGu- -3'
miRNA:   3'- gGCUG-CGGUAGG-GCC-UAGCg---UGGUuc -5'
18652 5' -56.7 NC_004682.1 + 40969 0.68 0.539034
Target:  5'- aCCGGCaGCCGcgaCUGGGUCGC-CCGGa -3'
miRNA:   3'- -GGCUG-CGGUag-GGCCUAGCGuGGUUc -5'
18652 5' -56.7 NC_004682.1 + 11425 0.68 0.528566
Target:  5'- aCCGACGacgacaCCGUCUCGGAgaGCGUCAAGa -3'
miRNA:   3'- -GGCUGC------GGUAGGGCCUagCGUGGUUC- -5'
18652 5' -56.7 NC_004682.1 + 20641 0.68 0.518174
Target:  5'- cCCGAaggaccauguCGCCGUUCCaGAgcCGCACCAGa -3'
miRNA:   3'- -GGCU----------GCGGUAGGGcCUa-GCGUGGUUc -5'
18652 5' -56.7 NC_004682.1 + 5116 0.68 0.507864
Target:  5'- gUCGACGCCGcgccgaUCCUGGcgCGUGCUgcGg -3'
miRNA:   3'- -GGCUGCGGU------AGGGCCuaGCGUGGuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.