miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18653 3' -61.7 NC_004682.1 + 547 0.66 0.369983
Target:  5'- cGCCGGaagcggcccuggagGCCGCuGGauaccgGCCCugGAGGCCg -3'
miRNA:   3'- -UGGCCa-------------CGGUGuCCa-----CGGG--UUCCGGg -5'
18653 3' -61.7 NC_004682.1 + 24159 0.66 0.366617
Target:  5'- aGCCGGUGCCc---GUGCCUgaguAGGUCa -3'
miRNA:   3'- -UGGCCACGGugucCACGGGu---UCCGGg -5'
18653 3' -61.7 NC_004682.1 + 37549 0.66 0.358295
Target:  5'- cACCGGgccgGCguCGGGUaGUCCAucAGGUCUc -3'
miRNA:   3'- -UGGCCa---CGguGUCCA-CGGGU--UCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 33143 0.66 0.342051
Target:  5'- gUCGGUGUaGCcGGUGCC---GGCCCa -3'
miRNA:   3'- uGGCCACGgUGuCCACGGguuCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 2087 0.66 0.334131
Target:  5'- cGCagGGU-CCGCAGG-GUCCAcaAGGUCCg -3'
miRNA:   3'- -UGg-CCAcGGUGUCCaCGGGU--UCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 24293 0.67 0.326346
Target:  5'- cAUCGGguugGCgAC-GGUGCCCGAGauGCUCu -3'
miRNA:   3'- -UGGCCa---CGgUGuCCACGGGUUC--CGGG- -5'
18653 3' -61.7 NC_004682.1 + 37246 0.67 0.303802
Target:  5'- aGCCGGaUGCCGCcacgguggccguGGGUGgUCAAccaGCCCg -3'
miRNA:   3'- -UGGCC-ACGGUG------------UCCACgGGUUc--CGGG- -5'
18653 3' -61.7 NC_004682.1 + 4724 0.67 0.303802
Target:  5'- cGCCGuGUGCCGCAGGcGCgCUAcacgucGGUCUa -3'
miRNA:   3'- -UGGC-CACGGUGUCCaCG-GGUu-----CCGGG- -5'
18653 3' -61.7 NC_004682.1 + 23901 0.67 0.303802
Target:  5'- gUCGGUGaCCGCAu-UGCCCA-GGCCg -3'
miRNA:   3'- uGGCCAC-GGUGUccACGGGUuCCGGg -5'
18653 3' -61.7 NC_004682.1 + 39421 0.68 0.282476
Target:  5'- gGCCGGUGCUACGGcUGCCgccGcGCCa -3'
miRNA:   3'- -UGGCCACGGUGUCcACGGguuC-CGGg -5'
18653 3' -61.7 NC_004682.1 + 26869 0.68 0.278355
Target:  5'- cACCGcGUGCUGCGGGggauggaccgcuggGCCUcugGAGuGCCCc -3'
miRNA:   3'- -UGGC-CACGGUGUCCa-------------CGGG---UUC-CGGG- -5'
18653 3' -61.7 NC_004682.1 + 37383 0.68 0.268264
Target:  5'- gGCCGGgGCgUAcCGGGUGagguacuCCCGAGGCCg -3'
miRNA:   3'- -UGGCCaCG-GU-GUCCAC-------GGGUUCCGGg -5'
18653 3' -61.7 NC_004682.1 + 31441 0.68 0.255908
Target:  5'- cCCGaUGCCACcuuccuugaAGG-GCCUggGGUCCa -3'
miRNA:   3'- uGGCcACGGUG---------UCCaCGGGuuCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 50474 0.68 0.249595
Target:  5'- gGCagGGUGCaGgGGGUGCCCuacagGGGGUCCu -3'
miRNA:   3'- -UGg-CCACGgUgUCCACGGG-----UUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 10650 0.69 0.245869
Target:  5'- gACCuGUGCCu--GGUGCCUgaugcucaucucccgAGGGCCUg -3'
miRNA:   3'- -UGGcCACGGuguCCACGGG---------------UUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 5126 0.69 0.24341
Target:  5'- cGCCGauccuggcgcGUGCUGCGGGcaucuccgaGgCCAAGGCCCg -3'
miRNA:   3'- -UGGC----------CACGGUGUCCa--------CgGGUUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 2279 0.69 0.237354
Target:  5'- uCCGGUGUCACccuucGG-GCCUuguGGGCCUu -3'
miRNA:   3'- uGGCCACGGUGu----CCaCGGGu--UCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 30794 0.69 0.237354
Target:  5'- gGCUGGUGCgGC-GGUGCUUccuGGCCg -3'
miRNA:   3'- -UGGCCACGgUGuCCACGGGuu-CCGGg -5'
18653 3' -61.7 NC_004682.1 + 1862 0.69 0.237354
Target:  5'- cCCGGccCCAUcGG-GCCgCAAGGCCCu -3'
miRNA:   3'- uGGCCacGGUGuCCaCGG-GUUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 38422 0.69 0.231424
Target:  5'- aGCCGGgGCUGCAguucgccaacacGGUGgCCAAGaGCCUg -3'
miRNA:   3'- -UGGCCaCGGUGU------------CCACgGGUUC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.