miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18653 3' -61.7 NC_004682.1 + 37246 0.67 0.303802
Target:  5'- aGCCGGaUGCCGCcacgguggccguGGGUGgUCAAccaGCCCg -3'
miRNA:   3'- -UGGCC-ACGGUG------------UCCACgGGUUc--CGGG- -5'
18653 3' -61.7 NC_004682.1 + 48365 0.69 0.22562
Target:  5'- aAUCGGUGCCuucgauCuGGUcGCCCAGGagcaucGCCCc -3'
miRNA:   3'- -UGGCCACGGu-----GuCCA-CGGGUUC------CGGG- -5'
18653 3' -61.7 NC_004682.1 + 1862 0.69 0.237354
Target:  5'- cCCGGccCCAUcGG-GCCgCAAGGCCCu -3'
miRNA:   3'- uGGCCacGGUGuCCaCGG-GUUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 5126 0.69 0.24341
Target:  5'- cGCCGauccuggcgcGUGCUGCGGGcaucuccgaGgCCAAGGCCCg -3'
miRNA:   3'- -UGGC----------CACGGUGUCCa--------CgGGUUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 10650 0.69 0.245869
Target:  5'- gACCuGUGCCu--GGUGCCUgaugcucaucucccgAGGGCCUg -3'
miRNA:   3'- -UGGcCACGGuguCCACGGG---------------UUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 50474 0.68 0.249595
Target:  5'- gGCagGGUGCaGgGGGUGCCCuacagGGGGUCCu -3'
miRNA:   3'- -UGg-CCACGgUgUCCACGGG-----UUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 31441 0.68 0.255908
Target:  5'- cCCGaUGCCACcuuccuugaAGG-GCCUggGGUCCa -3'
miRNA:   3'- uGGCcACGGUG---------UCCaCGGGuuCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 37383 0.68 0.268264
Target:  5'- gGCCGGgGCgUAcCGGGUGagguacuCCCGAGGCCg -3'
miRNA:   3'- -UGGCCaCG-GU-GUCCAC-------GGGUUCCGGg -5'
18653 3' -61.7 NC_004682.1 + 4724 0.67 0.303802
Target:  5'- cGCCGuGUGCCGCAGGcGCgCUAcacgucGGUCUa -3'
miRNA:   3'- -UGGC-CACGGUGUCCaCG-GGUu-----CCGGG- -5'
18653 3' -61.7 NC_004682.1 + 33733 0.69 0.22562
Target:  5'- gGCCGGgGCCuucuuCGGGgccucaGCCgGGGGCUCg -3'
miRNA:   3'- -UGGCCaCGGu----GUCCa-----CGGgUUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 25239 0.69 0.214381
Target:  5'- aGCCGGaGaCCGgcaAGGUaGCCCAccgcgucaAGGCCCa -3'
miRNA:   3'- -UGGCCaC-GGUg--UCCA-CGGGU--------UCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 2439 0.7 0.208944
Target:  5'- cACCGG-GCCGCaAGGU-CCCAAGGgUg -3'
miRNA:   3'- -UGGCCaCGGUG-UCCAcGGGUUCCgGg -5'
18653 3' -61.7 NC_004682.1 + 2160 0.76 0.064953
Target:  5'- uACCGGUccacaagGCCccaagggagacACGGGUuCCCAAGGCCCa -3'
miRNA:   3'- -UGGCCA-------CGG-----------UGUCCAcGGGUUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 2061 0.75 0.083726
Target:  5'- gACUGGU-CCGCAGG-GUCCGAccGGCCCg -3'
miRNA:   3'- -UGGCCAcGGUGUCCaCGGGUU--CCGGG- -5'
18653 3' -61.7 NC_004682.1 + 31844 0.75 0.083726
Target:  5'- uGCCGGUGCuCAaucaAGGUGCCCuccuacAGGCUUu -3'
miRNA:   3'- -UGGCCACG-GUg---UCCACGGGu-----UCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 2559 0.74 0.10441
Target:  5'- --gGGUGaCACcGGaGCCCAAGGCCCg -3'
miRNA:   3'- uggCCACgGUGuCCaCGGGUUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 10503 0.73 0.113343
Target:  5'- gGCCGGUGaCGCAGGcgugGCCCA-GGUCg -3'
miRNA:   3'- -UGGCCACgGUGUCCa---CGGGUuCCGGg -5'
18653 3' -61.7 NC_004682.1 + 38025 0.72 0.144589
Target:  5'- cUCGGUGCCG-AGGUGCCUcAGcGCCg -3'
miRNA:   3'- uGGCCACGGUgUCCACGGGuUC-CGGg -5'
18653 3' -61.7 NC_004682.1 + 2376 0.71 0.156646
Target:  5'- cACCGGUcccgaaggGCCACAGGgugagacggGaCCgCAGGGUCCg -3'
miRNA:   3'- -UGGCCA--------CGGUGUCCa--------C-GG-GUUCCGGG- -5'
18653 3' -61.7 NC_004682.1 + 2223 0.7 0.193343
Target:  5'- cACCGGacccaccgGCCcaGCAGGU-CCCAccGGCCCg -3'
miRNA:   3'- -UGGCCa-------CGG--UGUCCAcGGGUu-CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.