miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18654 3' -51.4 NC_004682.1 + 32333 0.66 0.862518
Target:  5'- -cCGCCGgaGCgACGGCGUAGUaCAg -3'
miRNA:   3'- aaGCGGCgaUGgUGUUGCGUUAaGUg -5'
18654 3' -51.4 NC_004682.1 + 3366 0.66 0.85379
Target:  5'- -cCGCCGCUGCCGaaggugAACGUAuggcuggCACc -3'
miRNA:   3'- aaGCGGCGAUGGUg-----UUGCGUuaa----GUG- -5'
18654 3' -51.4 NC_004682.1 + 27517 0.66 0.85379
Target:  5'- -gUGCCGCUugucaucgACgGCGGCGUGAUagUCGCu -3'
miRNA:   3'- aaGCGGCGA--------UGgUGUUGCGUUA--AGUG- -5'
18654 3' -51.4 NC_004682.1 + 40209 0.66 0.844806
Target:  5'- cUCGauGCUGCCGCAG-GCAAggagCACc -3'
miRNA:   3'- aAGCggCGAUGGUGUUgCGUUaa--GUG- -5'
18654 3' -51.4 NC_004682.1 + 29251 0.66 0.844806
Target:  5'- aUCG-CGCUgACUACGAcCGgGAUUCGCg -3'
miRNA:   3'- aAGCgGCGA-UGGUGUU-GCgUUAAGUG- -5'
18654 3' -51.4 NC_004682.1 + 11195 0.66 0.844806
Target:  5'- -cCGcCCGCUACCGCAACGaGAa---- -3'
miRNA:   3'- aaGC-GGCGAUGGUGUUGCgUUaagug -5'
18654 3' -51.4 NC_004682.1 + 8329 0.66 0.835574
Target:  5'- gUUCGCCaGCUACgACGuuguCGCAuucCGCg -3'
miRNA:   3'- -AAGCGG-CGAUGgUGUu---GCGUuaaGUG- -5'
18654 3' -51.4 NC_004682.1 + 32465 0.66 0.826104
Target:  5'- cUCGCUGCUcgucuACgGCGACaGCGGggCGCa -3'
miRNA:   3'- aAGCGGCGA-----UGgUGUUG-CGUUaaGUG- -5'
18654 3' -51.4 NC_004682.1 + 29318 0.66 0.826104
Target:  5'- aUCGCCGCcguCCACGGCuGUc--UCGCa -3'
miRNA:   3'- aAGCGGCGau-GGUGUUG-CGuuaAGUG- -5'
18654 3' -51.4 NC_004682.1 + 26263 0.66 0.826104
Target:  5'- -aCGCCGCUcaACUGCAACgGCAucUCGa -3'
miRNA:   3'- aaGCGGCGA--UGGUGUUG-CGUuaAGUg -5'
18654 3' -51.4 NC_004682.1 + 29904 0.67 0.816409
Target:  5'- cUCGCCGaacgcGCCGaucCGGCGCAGUUCc- -3'
miRNA:   3'- aAGCGGCga---UGGU---GUUGCGUUAAGug -5'
18654 3' -51.4 NC_004682.1 + 43984 0.67 0.796385
Target:  5'- -cCGCCugGCUcCCGCAggggaGCGCAGUcCACa -3'
miRNA:   3'- aaGCGG--CGAuGGUGU-----UGCGUUAaGUG- -5'
18654 3' -51.4 NC_004682.1 + 42785 0.67 0.796385
Target:  5'- -aCGCUGgagGCCGCGACcCGGUUCGCc -3'
miRNA:   3'- aaGCGGCga-UGGUGUUGcGUUAAGUG- -5'
18654 3' -51.4 NC_004682.1 + 23922 0.67 0.786082
Target:  5'- -aCGCgGCUGCCGCGAUGgg---CACg -3'
miRNA:   3'- aaGCGgCGAUGGUGUUGCguuaaGUG- -5'
18654 3' -51.4 NC_004682.1 + 10010 0.67 0.786082
Target:  5'- gUCGCUGCgucUGCCugGCGGCGUAcgUCGg -3'
miRNA:   3'- aAGCGGCG---AUGG--UGUUGCGUuaAGUg -5'
18654 3' -51.4 NC_004682.1 + 25334 0.67 0.775601
Target:  5'- -aCGCCGUggGCCuuGACGCGGUggGCu -3'
miRNA:   3'- aaGCGGCGa-UGGugUUGCGUUAagUG- -5'
18654 3' -51.4 NC_004682.1 + 10394 0.68 0.764956
Target:  5'- -cCGCCGCUggaccucggGCCACA--GCAGUUC-Ca -3'
miRNA:   3'- aaGCGGCGA---------UGGUGUugCGUUAAGuG- -5'
18654 3' -51.4 NC_004682.1 + 27636 0.68 0.764956
Target:  5'- --aGCgGCUcuGCCGCAGCGCcagugUCGCc -3'
miRNA:   3'- aagCGgCGA--UGGUGUUGCGuua--AGUG- -5'
18654 3' -51.4 NC_004682.1 + 11878 0.68 0.754159
Target:  5'- cUCGCCGgU-CCACGACGcCGAgacggCACc -3'
miRNA:   3'- aAGCGGCgAuGGUGUUGC-GUUaa---GUG- -5'
18654 3' -51.4 NC_004682.1 + 27697 0.68 0.732165
Target:  5'- -cCGCCGCUGuggcuCCugGcCGCAAcUCACc -3'
miRNA:   3'- aaGCGGCGAU-----GGugUuGCGUUaAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.