miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18654 5' -56.3 NC_004682.1 + 28178 0.66 0.668737
Target:  5'- cCGCGcUCGCCgccgcgaGCAGCcacgCCCGaGCGu -3'
miRNA:   3'- cGCGCaAGUGGa------UGUCGua--GGGC-CGC- -5'
18654 5' -56.3 NC_004682.1 + 36413 0.66 0.668737
Target:  5'- aGCGCGUcCuCCU-CGGacuugGUCUCGGCGa -3'
miRNA:   3'- -CGCGCAaGuGGAuGUCg----UAGGGCCGC- -5'
18654 5' -56.3 NC_004682.1 + 16900 0.66 0.657824
Target:  5'- gGCGCGUUCgguGCCgguguCGGCGcuguggcgCUCGGCa -3'
miRNA:   3'- -CGCGCAAG---UGGau---GUCGUa-------GGGCCGc -5'
18654 5' -56.3 NC_004682.1 + 3288 0.66 0.657824
Target:  5'- aGCcauaCGUUCACCUuCGGCAg--CGGCGg -3'
miRNA:   3'- -CGc---GCAAGUGGAuGUCGUaggGCCGC- -5'
18654 5' -56.3 NC_004682.1 + 19817 0.66 0.657824
Target:  5'- aCuCGUUCACCga-AGCAgCCCaGGCGa -3'
miRNA:   3'- cGcGCAAGUGGaugUCGUaGGG-CCGC- -5'
18654 5' -56.3 NC_004682.1 + 38346 0.66 0.646887
Target:  5'- cCGUGUUgGCgaaCUGCAGC--CCCGGCu -3'
miRNA:   3'- cGCGCAAgUG---GAUGUCGuaGGGCCGc -5'
18654 5' -56.3 NC_004682.1 + 33443 0.66 0.646887
Target:  5'- gGCGCGUUCgacuGCCUcugGguGCcaccacCCCGGCu -3'
miRNA:   3'- -CGCGCAAG----UGGA---UguCGua----GGGCCGc -5'
18654 5' -56.3 NC_004682.1 + 1828 0.66 0.624983
Target:  5'- cCGCGUUCGCCcguccgGGCGUcugcucgggcucCCCGGCc -3'
miRNA:   3'- cGCGCAAGUGGaug---UCGUA------------GGGCCGc -5'
18654 5' -56.3 NC_004682.1 + 20060 0.66 0.623888
Target:  5'- gGCGCGacUUCACCgucGCGGCAgucgcguUgCgGGCGa -3'
miRNA:   3'- -CGCGC--AAGUGGa--UGUCGU-------AgGgCCGC- -5'
18654 5' -56.3 NC_004682.1 + 32572 0.67 0.592197
Target:  5'- -aGCaGUUCGCCUGCcagggaacGgAUCUCGGCGu -3'
miRNA:   3'- cgCG-CAAGUGGAUGu-------CgUAGGGCCGC- -5'
18654 5' -56.3 NC_004682.1 + 49577 0.67 0.581323
Target:  5'- uUGCGaacCACCguCAGCGUCUCGGCc -3'
miRNA:   3'- cGCGCaa-GUGGauGUCGUAGGGCCGc -5'
18654 5' -56.3 NC_004682.1 + 5888 0.67 0.576985
Target:  5'- aGCGCGUugcUCGCg-ACGGCGUCCacccgaagucgugGGCGu -3'
miRNA:   3'- -CGCGCA---AGUGgaUGUCGUAGGg------------CCGC- -5'
18654 5' -56.3 NC_004682.1 + 34562 0.67 0.570491
Target:  5'- aCGCaGUUCGCacaccaGCuccGCAUCCCGGUGc -3'
miRNA:   3'- cGCG-CAAGUGga----UGu--CGUAGGGCCGC- -5'
18654 5' -56.3 NC_004682.1 + 30840 0.67 0.559709
Target:  5'- aUGuCGaUCACC---GGCAUCCCGGCu -3'
miRNA:   3'- cGC-GCaAGUGGaugUCGUAGGGCCGc -5'
18654 5' -56.3 NC_004682.1 + 9542 0.67 0.559709
Target:  5'- cUGCagUCGCCUGCaucagcaucAGCGUCCgGGCa -3'
miRNA:   3'- cGCGcaAGUGGAUG---------UCGUAGGgCCGc -5'
18654 5' -56.3 NC_004682.1 + 41396 0.68 0.548984
Target:  5'- aGCGgGaUCGCCUuguCGGCGUCguuguagccuCCGGUGa -3'
miRNA:   3'- -CGCgCaAGUGGAu--GUCGUAG----------GGCCGC- -5'
18654 5' -56.3 NC_004682.1 + 14874 0.68 0.547915
Target:  5'- gGCGCGaaCGCCUcgaccACgccugguguguucGGCGUCUCGGCu -3'
miRNA:   3'- -CGCGCaaGUGGA-----UG-------------UCGUAGGGCCGc -5'
18654 5' -56.3 NC_004682.1 + 18125 0.68 0.538324
Target:  5'- gGCGCGUcggacaUCgcgGCCaagGCGGCAgagcuaCCCGGCa -3'
miRNA:   3'- -CGCGCA------AG---UGGa--UGUCGUa-----GGGCCGc -5'
18654 5' -56.3 NC_004682.1 + 46427 0.68 0.538324
Target:  5'- -gGCGUUC-CCU-C-GCA-CCCGGCGg -3'
miRNA:   3'- cgCGCAAGuGGAuGuCGUaGGGCCGC- -5'
18654 5' -56.3 NC_004682.1 + 9844 0.68 0.517227
Target:  5'- uGCGCGUg-GCCUACAagGUCaugaaCGGCGg -3'
miRNA:   3'- -CGCGCAagUGGAUGUcgUAGg----GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.