miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18655 5' -63.7 NC_004682.1 + 7272 0.66 0.303568
Target:  5'- gGCGAGCCAGCgugcucaccgCCGGggguCUugacguacgcAgCCCACCAg -3'
miRNA:   3'- gCGCUCGGUCG----------GGCC----GA----------UgGGGUGGU- -5'
18655 5' -63.7 NC_004682.1 + 17143 0.66 0.296426
Target:  5'- gCGCGGGuCCuGCCCaGCUAgagaacauCCUgGCCAa -3'
miRNA:   3'- -GCGCUC-GGuCGGGcCGAU--------GGGgUGGU- -5'
18655 5' -63.7 NC_004682.1 + 26419 0.66 0.289415
Target:  5'- gGCgGGGCCAGCCggaucgGGUUGCCCucagcguccagCACCGu -3'
miRNA:   3'- gCG-CUCGGUCGGg-----CCGAUGGG-----------GUGGU- -5'
18655 5' -63.7 NC_004682.1 + 43920 0.66 0.289415
Target:  5'- gCGgGAGCCAGgC-GGCUGgCCUcuGCCAu -3'
miRNA:   3'- -GCgCUCGGUCgGgCCGAUgGGG--UGGU- -5'
18655 5' -63.7 NC_004682.1 + 5462 0.66 0.282535
Target:  5'- aGUGGGCCGGCaUCGGCgcgGCCUggUACUg -3'
miRNA:   3'- gCGCUCGGUCG-GGCCGa--UGGG--GUGGu -5'
18655 5' -63.7 NC_004682.1 + 40755 0.66 0.282535
Target:  5'- -cCG-GCCAGCCCgacuGGCgggcACCCCACg- -3'
miRNA:   3'- gcGCuCGGUCGGG----CCGa---UGGGGUGgu -5'
18655 5' -63.7 NC_004682.1 + 41247 0.66 0.275785
Target:  5'- cCGCGuAGUCgAGCCCGGaCggguccgACCggCCACCAc -3'
miRNA:   3'- -GCGC-UCGG-UCGGGCC-Ga------UGG--GGUGGU- -5'
18655 5' -63.7 NC_004682.1 + 829 0.66 0.275785
Target:  5'- aGCGGGCCaggAGCCCG-CUGa-CCACCc -3'
miRNA:   3'- gCGCUCGG---UCGGGCcGAUggGGUGGu -5'
18655 5' -63.7 NC_004682.1 + 40984 0.66 0.269165
Target:  5'- uGCGAGCCagcGGCCUGGCcAgCUCgguGCCGu -3'
miRNA:   3'- gCGCUCGG---UCGGGCCGaUgGGG---UGGU- -5'
18655 5' -63.7 NC_004682.1 + 2635 0.66 0.269164
Target:  5'- uGCGGGCCuugGGCuCCGGUgucACCCUugUc -3'
miRNA:   3'- gCGCUCGG---UCG-GGCCGa--UGGGGugGu -5'
18655 5' -63.7 NC_004682.1 + 15707 0.67 0.262673
Target:  5'- gGCGGGCgAGCgCuCGGCUuCCCCcgGCUg -3'
miRNA:   3'- gCGCUCGgUCG-G-GCCGAuGGGG--UGGu -5'
18655 5' -63.7 NC_004682.1 + 33820 0.67 0.252551
Target:  5'- -aCGAGCC--CCCGGCUgaggccccgaagaagGCCCCgGCCAa -3'
miRNA:   3'- gcGCUCGGucGGGCCGA---------------UGGGG-UGGU- -5'
18655 5' -63.7 NC_004682.1 + 6569 0.67 0.24396
Target:  5'- uGCGAG-UAGCCCgccaGGUUgACCUCACCGg -3'
miRNA:   3'- gCGCUCgGUCGGG----CCGA-UGGGGUGGU- -5'
18655 5' -63.7 NC_004682.1 + 26502 0.67 0.24396
Target:  5'- aCGCuGAGggcaacCCGaUCCGGCUgGCCCCGCCGa -3'
miRNA:   3'- -GCG-CUC------GGUcGGGCCGA-UGGGGUGGU- -5'
18655 5' -63.7 NC_004682.1 + 33461 0.67 0.24396
Target:  5'- uGgGuGCCAccacCCCGGCUGCCgccguugccgCCGCCAg -3'
miRNA:   3'- gCgCuCGGUc---GGGCCGAUGG----------GGUGGU- -5'
18655 5' -63.7 NC_004682.1 + 46591 0.67 0.237974
Target:  5'- aGCG-GCCAGCUCaagaGCUACCgCCGCg- -3'
miRNA:   3'- gCGCuCGGUCGGGc---CGAUGG-GGUGgu -5'
18655 5' -63.7 NC_004682.1 + 7418 0.67 0.230375
Target:  5'- cCGCGAGCgagAGCgCGGCUgcgaacggguccuuGCCCCAgCCc -3'
miRNA:   3'- -GCGCUCGg--UCGgGCCGA--------------UGGGGU-GGu -5'
18655 5' -63.7 NC_004682.1 + 13926 0.68 0.215248
Target:  5'- gCGCGGGCCugugccagguuGGCCuCGGCcuuccgGCCUCGCUc -3'
miRNA:   3'- -GCGCUCGG-----------UCGG-GCCGa-----UGGGGUGGu -5'
18655 5' -63.7 NC_004682.1 + 27869 0.68 0.209866
Target:  5'- cCGaaGGCCAGCCCGGaggGCuUCCGCUAg -3'
miRNA:   3'- -GCgcUCGGUCGGGCCga-UG-GGGUGGU- -5'
18655 5' -63.7 NC_004682.1 + 5063 0.68 0.199447
Target:  5'- aCGCGuacGCCGacgccGCaCCGGCUGCuCCCGCa- -3'
miRNA:   3'- -GCGCu--CGGU-----CG-GGCCGAUG-GGGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.