miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18656 3' -54.1 NC_004682.1 + 23922 0.66 0.800595
Target:  5'- aCGCGgcugCCGCgAugGGCAcgAUCUACa -3'
miRNA:   3'- gGCGCa---GGUG-UugCCGUagUGGAUGc -5'
18656 3' -54.1 NC_004682.1 + 5192 0.66 0.800595
Target:  5'- aCGCG-CCAgGaucggcGCGGCGUCgACC-ACGg -3'
miRNA:   3'- gGCGCaGGUgU------UGCCGUAG-UGGaUGC- -5'
18656 3' -54.1 NC_004682.1 + 30029 0.66 0.800595
Target:  5'- aUGCGacUCC-CGA-GGcCAUCGCCUACGc -3'
miRNA:   3'- gGCGC--AGGuGUUgCC-GUAGUGGAUGC- -5'
18656 3' -54.1 NC_004682.1 + 7290 0.66 0.800595
Target:  5'- uCCaGCGUCgGCAugaACGGCGagccagcgugcUCACCgcCGg -3'
miRNA:   3'- -GG-CGCAGgUGU---UGCCGU-----------AGUGGauGC- -5'
18656 3' -54.1 NC_004682.1 + 15415 0.66 0.800595
Target:  5'- uUGCGgagCACGACGGCGucgUCGCCUcccaGCu -3'
miRNA:   3'- gGCGCag-GUGUUGCCGU---AGUGGA----UGc -5'
18656 3' -54.1 NC_004682.1 + 39480 0.66 0.800595
Target:  5'- uCUuCG-CCACcuACGGCAUCACCgcCGa -3'
miRNA:   3'- -GGcGCaGGUGu-UGCCGUAGUGGauGC- -5'
18656 3' -54.1 NC_004682.1 + 42178 0.66 0.797699
Target:  5'- gCCGCGUCCuGCuccuCGGUgagggccuuguugagCGCCUGCa -3'
miRNA:   3'- -GGCGCAGG-UGuu--GCCGua-------------GUGGAUGc -5'
18656 3' -54.1 NC_004682.1 + 23182 0.66 0.79088
Target:  5'- aCUGCG-CCAC-GCGGCGaccgCACCgAUGg -3'
miRNA:   3'- -GGCGCaGGUGuUGCCGUa---GUGGaUGC- -5'
18656 3' -54.1 NC_004682.1 + 32826 0.66 0.780003
Target:  5'- gCCGCGUCC-CGGCG-CGUCgaucagauccuugACCgcugGCGg -3'
miRNA:   3'- -GGCGCAGGuGUUGCcGUAG-------------UGGa---UGC- -5'
18656 3' -54.1 NC_004682.1 + 17127 0.66 0.770965
Target:  5'- cCCGuCGUgaGCAuCGGCAUCAUC-GCGa -3'
miRNA:   3'- -GGC-GCAggUGUuGCCGUAGUGGaUGC- -5'
18656 3' -54.1 NC_004682.1 + 11994 0.67 0.750476
Target:  5'- aCGCGgcugCCAUccACGGCAUCGacaagccgUCUGCGu -3'
miRNA:   3'- gGCGCa---GGUGu-UGCCGUAGU--------GGAUGC- -5'
18656 3' -54.1 NC_004682.1 + 4794 0.67 0.750476
Target:  5'- gCGCGcCUGCGgcacACGGCGauccagCACCUGCu -3'
miRNA:   3'- gGCGCaGGUGU----UGCCGUa-----GUGGAUGc -5'
18656 3' -54.1 NC_004682.1 + 8717 0.67 0.750476
Target:  5'- aCCGCG-CagACGGCGGCGUCAaucuuCUUGCc -3'
miRNA:   3'- -GGCGCaGg-UGUUGCCGUAGU-----GGAUGc -5'
18656 3' -54.1 NC_004682.1 + 40231 0.67 0.750476
Target:  5'- gCGUGUCCugG-CGGCGau-CCUGCu -3'
miRNA:   3'- gGCGCAGGugUuGCCGUaguGGAUGc -5'
18656 3' -54.1 NC_004682.1 + 44802 0.67 0.750476
Target:  5'- aCGUGgCCAcCGGCGGCGUCggcauGCCcgACGa -3'
miRNA:   3'- gGCGCaGGU-GUUGCCGUAG-----UGGa-UGC- -5'
18656 3' -54.1 NC_004682.1 + 49602 0.67 0.750476
Target:  5'- gCGCuacuugGUCCGCGACaGGUAUgGCCgucACGg -3'
miRNA:   3'- gGCG------CAGGUGUUG-CCGUAgUGGa--UGC- -5'
18656 3' -54.1 NC_004682.1 + 45517 0.67 0.736894
Target:  5'- gUGCG-CCGCAcuGCGGUGUucacaaguuggaccCGCCUGCGc -3'
miRNA:   3'- gGCGCaGGUGU--UGCCGUA--------------GUGGAUGC- -5'
18656 3' -54.1 NC_004682.1 + 6897 0.67 0.729504
Target:  5'- -aGCGUCCGCucaccGAgGGCAUCGCaaugGCc -3'
miRNA:   3'- ggCGCAGGUG-----UUgCCGUAGUGga--UGc -5'
18656 3' -54.1 NC_004682.1 + 4903 0.67 0.729504
Target:  5'- cCCGCG-CUACucggGCGGCAcCACgUACc -3'
miRNA:   3'- -GGCGCaGGUGu---UGCCGUaGUGgAUGc -5'
18656 3' -54.1 NC_004682.1 + 19981 0.67 0.729504
Target:  5'- aCGCGacugCCGCGACGGUgaagucgCGCCUGg- -3'
miRNA:   3'- gGCGCa---GGUGUUGCCGua-----GUGGAUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.