miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18657 3' -57 NC_004682.1 + 13562 0.66 0.619786
Target:  5'- --uGCACCUGGaaucgcgccUUGGCCGGGAUGc -3'
miRNA:   3'- ucuCGUGGGCCgac------AAUUGGCCCUGC- -5'
18657 3' -57 NC_004682.1 + 5499 0.66 0.619786
Target:  5'- cGAGCGCCCGgacaucaacgcGCUGUgcgaccGCCGcGACa -3'
miRNA:   3'- uCUCGUGGGC-----------CGACAau----UGGCcCUGc -5'
18657 3' -57 NC_004682.1 + 42144 0.66 0.608868
Target:  5'- cGGA-CGCCCGGUg---GAgUGGGACGa -3'
miRNA:   3'- -UCUcGUGGGCCGacaaUUgGCCCUGC- -5'
18657 3' -57 NC_004682.1 + 25711 0.66 0.608868
Target:  5'- uGGAGCGCCCGGacagcgcuacuucgaCGGGACc -3'
miRNA:   3'- -UCUCGUGGGCCgacaauug-------GCCCUGc -5'
18657 3' -57 NC_004682.1 + 16703 0.66 0.584931
Target:  5'- gAGGGCucgggucgauguCCCGGCUGUUcucGGCguuCGGcGACGa -3'
miRNA:   3'- -UCUCGu-----------GGGCCGACAA---UUG---GCC-CUGC- -5'
18657 3' -57 NC_004682.1 + 37307 0.67 0.554747
Target:  5'- -cGGCAUCCGGCUGaaccagAACgCGGGcagcACGg -3'
miRNA:   3'- ucUCGUGGGCCGACaa----UUG-GCCC----UGC- -5'
18657 3' -57 NC_004682.1 + 24693 0.67 0.554747
Target:  5'- cGGAGC-CCgUGGC-GUUcGCCGGGuCGg -3'
miRNA:   3'- -UCUCGuGG-GCCGaCAAuUGGCCCuGC- -5'
18657 3' -57 NC_004682.1 + 5740 0.67 0.544074
Target:  5'- aAGGGUccgACCCGGUcGUucaUGGCCGaGGACc -3'
miRNA:   3'- -UCUCG---UGGGCCGaCA---AUUGGC-CCUGc -5'
18657 3' -57 NC_004682.1 + 39460 0.67 0.538763
Target:  5'- uGGGCucgcuugGCCCGGUggUGUguagcgcaccgugGGCCGGGAUGu -3'
miRNA:   3'- uCUCG-------UGGGCCG--ACAa------------UUGGCCCUGC- -5'
18657 3' -57 NC_004682.1 + 46484 0.67 0.533469
Target:  5'- cGGAGC-CuuGGUccucuACCGGGGCGa -3'
miRNA:   3'- -UCUCGuGggCCGacaauUGGCCCUGC- -5'
18657 3' -57 NC_004682.1 + 48194 0.67 0.522938
Target:  5'- cGAGCAUCUGGUcccaUGUcucGACCaGGACGc -3'
miRNA:   3'- uCUCGUGGGCCG----ACAa--UUGGcCCUGC- -5'
18657 3' -57 NC_004682.1 + 40559 0.67 0.512488
Target:  5'- uAGGGCugaaaGCCgUGGUUGacGACCGGGAUGc -3'
miRNA:   3'- -UCUCG-----UGG-GCCGACaaUUGGCCCUGC- -5'
18657 3' -57 NC_004682.1 + 15701 0.69 0.422968
Target:  5'- cGAGCGCUCGGCUucccccGGCUGGGuCGc -3'
miRNA:   3'- uCUCGUGGGCCGAcaa---UUGGCCCuGC- -5'
18657 3' -57 NC_004682.1 + 34787 0.69 0.422968
Target:  5'- cGGGCGCaCCGGCUGgUGACuCGguuccugaugcGGGCGa -3'
miRNA:   3'- uCUCGUG-GGCCGACaAUUG-GC-----------CCUGC- -5'
18657 3' -57 NC_004682.1 + 14971 0.69 0.401623
Target:  5'- cGAGCgugucggcuuccacGCCCacaaGGCgucgGUgcGCCGGGACGa -3'
miRNA:   3'- uCUCG--------------UGGG----CCGa---CAauUGGCCCUGC- -5'
18657 3' -57 NC_004682.1 + 46417 0.7 0.3602
Target:  5'- --cGCACCCGGCg---GGCuCGGGGCc -3'
miRNA:   3'- ucuCGUGGGCCGacaaUUG-GCCCUGc -5'
18657 3' -57 NC_004682.1 + 3169 0.7 0.3602
Target:  5'- cGGGCACCaCGGCg---GGCCaGGGCGc -3'
miRNA:   3'- uCUCGUGG-GCCGacaaUUGGcCCUGC- -5'
18657 3' -57 NC_004682.1 + 50142 0.78 0.110661
Target:  5'- uGAGCACCCGGCUGagAAUuCGGGAa- -3'
miRNA:   3'- uCUCGUGGGCCGACaaUUG-GCCCUgc -5'
18657 3' -57 NC_004682.1 + 3948 1.08 0.000728
Target:  5'- cAGAGCACCCGGCUGUUAACCGGGACGu -3'
miRNA:   3'- -UCUCGUGGGCCGACAAUUGGCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.