miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18657 5' -57.3 NC_004682.1 + 20506 0.66 0.576731
Target:  5'- cGUCauggCCCAGAg-GGCUAUGCGGGa- -3'
miRNA:   3'- -CAGga--GGGUCUagUCGGUACGCUCgc -5'
18657 5' -57.3 NC_004682.1 + 30114 0.66 0.576731
Target:  5'- -aCCggaCCCAucuGcUCGGCCAUcagGCGAGCGa -3'
miRNA:   3'- caGGa--GGGU---CuAGUCGGUA---CGCUCGC- -5'
18657 5' -57.3 NC_004682.1 + 438 0.66 0.576731
Target:  5'- --gCUCCCGGAggggAGCCGcuUGgGGGCGg -3'
miRNA:   3'- cagGAGGGUCUag--UCGGU--ACgCUCGC- -5'
18657 5' -57.3 NC_004682.1 + 46616 0.66 0.54428
Target:  5'- cGUUCUCgaCCAGGcgCAGCaucUGCGGGCGc -3'
miRNA:   3'- -CAGGAG--GGUCUa-GUCGgu-ACGCUCGC- -5'
18657 5' -57.3 NC_004682.1 + 35764 0.67 0.502004
Target:  5'- aUCCUCCCcGGUgGacGCCAccUGUGGGCa -3'
miRNA:   3'- cAGGAGGGuCUAgU--CGGU--ACGCUCGc -5'
18657 5' -57.3 NC_004682.1 + 14144 0.67 0.471263
Target:  5'- cGUCCUCCC-GAUCcuCCggGCG-GCGc -3'
miRNA:   3'- -CAGGAGGGuCUAGucGGuaCGCuCGC- -5'
18657 5' -57.3 NC_004682.1 + 31742 0.68 0.412843
Target:  5'- aGUCCgaggaagCCCAGAUgAGCCcgGaCGAagucGCGg -3'
miRNA:   3'- -CAGGa------GGGUCUAgUCGGuaC-GCU----CGC- -5'
18657 5' -57.3 NC_004682.1 + 15070 0.69 0.394384
Target:  5'- cGUCgUCCCGGcgCAccgacGCCuUGUGGGCGu -3'
miRNA:   3'- -CAGgAGGGUCuaGU-----CGGuACGCUCGC- -5'
18657 5' -57.3 NC_004682.1 + 21361 0.69 0.376468
Target:  5'- -aUgUCCCAGAccaggCAGCCGUGCcgaaucgggauGAGCGa -3'
miRNA:   3'- caGgAGGGUCUa----GUCGGUACG-----------CUCGC- -5'
18657 5' -57.3 NC_004682.1 + 47884 0.69 0.367718
Target:  5'- -gCgUCCCAGcUCuGCCGUGCucGAGCGc -3'
miRNA:   3'- caGgAGGGUCuAGuCGGUACG--CUCGC- -5'
18657 5' -57.3 NC_004682.1 + 49921 0.72 0.25168
Target:  5'- aUCCUCCCAGGUCcgacuaugucagugGGgCGUGCGAuGCc -3'
miRNA:   3'- cAGGAGGGUCUAG--------------UCgGUACGCU-CGc -5'
18657 5' -57.3 NC_004682.1 + 3986 0.97 0.004033
Target:  5'- aGUCCU-CCAGAUCAGCCAUGCGAGCGg -3'
miRNA:   3'- -CAGGAgGGUCUAGUCGGUACGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.