miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18659 3' -64.1 NC_004682.1 + 47430 0.66 0.271767
Target:  5'- cCGGaGCGCccucgaacGGAGCcuCGGUGUCGGCGu -3'
miRNA:   3'- uGCC-CGCG--------CCUCGc-GCCACGGCUGUu -5'
18659 3' -64.1 NC_004682.1 + 13647 0.66 0.252485
Target:  5'- -aGuGGCGUGGAGUGCGGUG--GGCGc -3'
miRNA:   3'- ugC-CCGCGCCUCGCGCCACggCUGUu -5'
18659 3' -64.1 NC_004682.1 + 47529 0.66 0.252485
Target:  5'- cUGGGuCGaCGGGGUGCgugcccaucaGGUgGCCGACGAu -3'
miRNA:   3'- uGCCC-GC-GCCUCGCG----------CCA-CGGCUGUU- -5'
18659 3' -64.1 NC_004682.1 + 35176 0.67 0.240266
Target:  5'- gGCGGuguGCGcCGGucAGCGCGGaUGUCGAUGAu -3'
miRNA:   3'- -UGCC---CGC-GCC--UCGCGCC-ACGGCUGUU- -5'
18659 3' -64.1 NC_004682.1 + 43225 0.67 0.234343
Target:  5'- cCGGGaCGaccgccuggacCGGAGCGUGGcggcUGCCGACc- -3'
miRNA:   3'- uGCCC-GC-----------GCCUCGCGCC----ACGGCUGuu -5'
18659 3' -64.1 NC_004682.1 + 6361 0.67 0.228544
Target:  5'- cAC-GGCGCGG---GCGGUGCuCGACAAg -3'
miRNA:   3'- -UGcCCGCGCCucgCGCCACG-GCUGUU- -5'
18659 3' -64.1 NC_004682.1 + 40840 0.67 0.217309
Target:  5'- gAUGGGCGUGGGGUGCccgccagucGG-GCUGGCc- -3'
miRNA:   3'- -UGCCCGCGCCUCGCG---------CCaCGGCUGuu -5'
18659 3' -64.1 NC_004682.1 + 21271 0.68 0.20655
Target:  5'- aACGGGUGCGGGucuucGcCGUGGagguagcGCCGACAc -3'
miRNA:   3'- -UGCCCGCGCCU-----C-GCGCCa------CGGCUGUu -5'
18659 3' -64.1 NC_004682.1 + 2960 0.68 0.196255
Target:  5'- -gGGGCGCGG-GCgGCGGcGCUGgGCAGu -3'
miRNA:   3'- ugCCCGCGCCuCG-CGCCaCGGC-UGUU- -5'
18659 3' -64.1 NC_004682.1 + 20589 0.71 0.115862
Target:  5'- -gGGGCGUGGucgcuggcgAGCGUGGUGgCGACu- -3'
miRNA:   3'- ugCCCGCGCC---------UCGCGCCACgGCUGuu -5'
18659 3' -64.1 NC_004682.1 + 5153 0.73 0.076981
Target:  5'- uGCGGGUGCGGgagcagccGGUGCGGcGUCGGCGu -3'
miRNA:   3'- -UGCCCGCGCC--------UCGCGCCaCGGCUGUu -5'
18659 3' -64.1 NC_004682.1 + 4391 1.05 0.000238
Target:  5'- cACGGGCGCGGAGCGCGGUGCCGACAAg -3'
miRNA:   3'- -UGCCCGCGCCUCGCGCCACGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.