miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18659 5' -57.6 NC_004682.1 + 42576 0.66 0.58479
Target:  5'- aGUUUCCGGCGCuGCUUGGcgauguucaugccUGGCUGGAu -3'
miRNA:   3'- gUAGGGGCCGUG-CGAGCU-------------ACUGGUCU- -5'
18659 5' -57.6 NC_004682.1 + 27302 0.66 0.58263
Target:  5'- aCAUCCCuCGGCugGC-CGA-GACaaguacaguugcgaCAGAc -3'
miRNA:   3'- -GUAGGG-GCCGugCGaGCUaCUG--------------GUCU- -5'
18659 5' -57.6 NC_004682.1 + 26798 0.66 0.564337
Target:  5'- cCAUCCCCcgcaGCACGCggugCGAgucccUGGCgCGGGa -3'
miRNA:   3'- -GUAGGGGc---CGUGCGa---GCU-----ACUG-GUCU- -5'
18659 5' -57.6 NC_004682.1 + 43426 0.66 0.553647
Target:  5'- aGUCCCCGaucuGCGgggGCUCGAUGccguaggucucgGCCAGGg -3'
miRNA:   3'- gUAGGGGC----CGUg--CGAGCUAC------------UGGUCU- -5'
18659 5' -57.6 NC_004682.1 + 31009 0.67 0.52197
Target:  5'- --gCCCCGGCgcaucaGCGcCUCGgcGACCuGGAu -3'
miRNA:   3'- guaGGGGCCG------UGC-GAGCuaCUGG-UCU- -5'
18659 5' -57.6 NC_004682.1 + 6681 0.67 0.49102
Target:  5'- --gCCCagacucguaCGGCAUcCUCGAUGACCGGc -3'
miRNA:   3'- guaGGG---------GCCGUGcGAGCUACUGGUCu -5'
18659 5' -57.6 NC_004682.1 + 24394 0.67 0.480892
Target:  5'- --gUCCCGGCgaACGCgaacuucaaccUCGGUGugCGGAu -3'
miRNA:   3'- guaGGGGCCG--UGCG-----------AGCUACugGUCU- -5'
18659 5' -57.6 NC_004682.1 + 17914 0.67 0.480892
Target:  5'- gAUCaacaUCGGCGCgaGCUUGAUGACCGa- -3'
miRNA:   3'- gUAGg---GGCCGUG--CGAGCUACUGGUcu -5'
18659 5' -57.6 NC_004682.1 + 46414 0.68 0.460948
Target:  5'- ---aCCCGGCGgGCUCGG-GGCCGc- -3'
miRNA:   3'- guagGGGCCGUgCGAGCUaCUGGUcu -5'
18659 5' -57.6 NC_004682.1 + 43019 0.69 0.394841
Target:  5'- gGUCCCCGGCuccagcuuGCGgUCGuUGACCu-- -3'
miRNA:   3'- gUAGGGGCCG--------UGCgAGCuACUGGucu -5'
18659 5' -57.6 NC_004682.1 + 30260 0.69 0.377109
Target:  5'- -cUCCCCGGuCACGUcgCGAgacgugGACUGGAu -3'
miRNA:   3'- guAGGGGCC-GUGCGa-GCUa-----CUGGUCU- -5'
18659 5' -57.6 NC_004682.1 + 7774 0.69 0.368447
Target:  5'- aCAUCCCCGGCaACGacaCcGUGGCCgAGAa -3'
miRNA:   3'- -GUAGGGGCCG-UGCga-GcUACUGG-UCU- -5'
18659 5' -57.6 NC_004682.1 + 29152 0.7 0.359922
Target:  5'- aCAUCuCCCGGCaggACGCUCugGAUGGCUg-- -3'
miRNA:   3'- -GUAG-GGGCCG---UGCGAG--CUACUGGucu -5'
18659 5' -57.6 NC_004682.1 + 25132 0.7 0.343288
Target:  5'- gAUCUCaGaGCAC-CUCGGUGACCAGGu -3'
miRNA:   3'- gUAGGGgC-CGUGcGAGCUACUGGUCU- -5'
18659 5' -57.6 NC_004682.1 + 40700 0.7 0.335182
Target:  5'- --aCCCCGGCGCGCUUGccGugCu-- -3'
miRNA:   3'- guaGGGGCCGUGCGAGCuaCugGucu -5'
18659 5' -57.6 NC_004682.1 + 9019 0.7 0.327216
Target:  5'- --cUCCUGGCGCGCUgCGAUGgcgcgauguagaGCCGGGg -3'
miRNA:   3'- guaGGGGCCGUGCGA-GCUAC------------UGGUCU- -5'
18659 5' -57.6 NC_004682.1 + 16885 0.71 0.296764
Target:  5'- -cUCCCCucgcucaucGGCGCGUUCGGUG-CCGGu -3'
miRNA:   3'- guAGGGG---------CCGUGCGAGCUACuGGUCu -5'
18659 5' -57.6 NC_004682.1 + 31531 0.73 0.218686
Target:  5'- gAUgCCCaGCguGCGCUCGAUGACCuGGAg -3'
miRNA:   3'- gUAgGGGcCG--UGCGAGCUACUGG-UCU- -5'
18659 5' -57.6 NC_004682.1 + 24723 0.76 0.142436
Target:  5'- aGUUCCCGGCACGcCUCGAcauccUGgcACCGGAg -3'
miRNA:   3'- gUAGGGGCCGUGC-GAGCU-----AC--UGGUCU- -5'
18659 5' -57.6 NC_004682.1 + 4429 1.09 0.000587
Target:  5'- aCAUCCCCGGCACGCUCGAUGACCAGAu -3'
miRNA:   3'- -GUAGGGGCCGUGCGAGCUACUGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.