miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18660 3' -55.6 NC_004682.1 + 30564 0.66 0.726136
Target:  5'- aUCUCC--CGGuCGGGCCACGCGGcccGUg -3'
miRNA:   3'- -GGAGGcaGCUuGUUCGGUGCGCCu--CA- -5'
18660 3' -55.6 NC_004682.1 + 23324 0.66 0.704873
Target:  5'- gCUCC-UCGcGCAGGCCACcgauguccuuGCGGAu- -3'
miRNA:   3'- gGAGGcAGCuUGUUCGGUG----------CGCCUca -5'
18660 3' -55.6 NC_004682.1 + 14234 0.66 0.69413
Target:  5'- cCUUCaCGUCaGGCAGcGCCGCcCGGAGg -3'
miRNA:   3'- -GGAG-GCAGcUUGUU-CGGUGcGCCUCa -5'
18660 3' -55.6 NC_004682.1 + 41879 0.66 0.69413
Target:  5'- aCCagCG-CGAGCuGGCCGCGCaGGAa- -3'
miRNA:   3'- -GGagGCaGCUUGuUCGGUGCG-CCUca -5'
18660 3' -55.6 NC_004682.1 + 30637 0.67 0.661591
Target:  5'- uCgUCCgGUCGcccGACAgcgcGGCCaggACGCGGAGUu -3'
miRNA:   3'- -GgAGG-CAGC---UUGU----UCGG---UGCGCCUCA- -5'
18660 3' -55.6 NC_004682.1 + 7414 0.67 0.650677
Target:  5'- -aUCCGgUGGGCAAGCCACGCcacgccgcguGGAu- -3'
miRNA:   3'- ggAGGCaGCUUGUUCGGUGCG----------CCUca -5'
18660 3' -55.6 NC_004682.1 + 42252 0.67 0.639745
Target:  5'- cCCUcaCCGagGAGCAggacgcGGCCuCGCGGGGc -3'
miRNA:   3'- -GGA--GGCagCUUGU------UCGGuGCGCCUCa -5'
18660 3' -55.6 NC_004682.1 + 11685 0.67 0.628807
Target:  5'- aCUCC--CGAGCAgAGCCAggacuacuuCGCGGAGa -3'
miRNA:   3'- gGAGGcaGCUUGU-UCGGU---------GCGCCUCa -5'
18660 3' -55.6 NC_004682.1 + 5914 0.68 0.596047
Target:  5'- ---aCGUCGAACAGGUagGCGCGGGu- -3'
miRNA:   3'- ggagGCAGCUUGUUCGg-UGCGCCUca -5'
18660 3' -55.6 NC_004682.1 + 36640 0.69 0.542157
Target:  5'- aCUCCGaCGGcgGCAAGCCGCaggGCGGcgAGUc -3'
miRNA:   3'- gGAGGCaGCU--UGUUCGGUG---CGCC--UCA- -5'
18660 3' -55.6 NC_004682.1 + 28949 0.71 0.421191
Target:  5'- aCUCCGUCGAguACGAGuCCAUcCGGuAGUc -3'
miRNA:   3'- gGAGGCAGCU--UGUUC-GGUGcGCC-UCA- -5'
18660 3' -55.6 NC_004682.1 + 33695 0.72 0.367098
Target:  5'- gCUCCGUgGAuCGucauCCACGCGGAGa -3'
miRNA:   3'- gGAGGCAgCUuGUuc--GGUGCGCCUCa -5'
18660 3' -55.6 NC_004682.1 + 19672 0.72 0.367098
Target:  5'- uCCUCCuUCGGccaGGGCCACG-GGAGUg -3'
miRNA:   3'- -GGAGGcAGCUug-UUCGGUGCgCCUCA- -5'
18660 3' -55.6 NC_004682.1 + 41018 0.72 0.341902
Target:  5'- ---aCGUCGAGCGAGCCGCcaaGCGGuGg -3'
miRNA:   3'- ggagGCAGCUUGUUCGGUG---CGCCuCa -5'
18660 3' -55.6 NC_004682.1 + 47407 0.76 0.217287
Target:  5'- gCCUUCGUCGGACAGGCagACGacCGGAGc -3'
miRNA:   3'- -GGAGGCAGCUUGUUCGg-UGC--GCCUCa -5'
18660 3' -55.6 NC_004682.1 + 4861 1.1 0.000888
Target:  5'- gCCUCCGUCGAACAAGCCACGCGGAGUg -3'
miRNA:   3'- -GGAGGCAGCUUGUUCGGUGCGCCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.