miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18660 5' -62 NC_004682.1 + 1159 0.65 0.382
Target:  5'- gGAGCCCaucgaggaaguggaGCGCUGuC-CGGGC-GUACUg -3'
miRNA:   3'- aCUCGGG--------------CGCGAU-GaGCCCGcCGUGG- -5'
18660 5' -62 NC_004682.1 + 1466 0.66 0.376039
Target:  5'- cGAGCCCGU-CaACUUcccGGCaGGCACCc -3'
miRNA:   3'- aCUCGGGCGcGaUGAGc--CCG-CCGUGG- -5'
18660 5' -62 NC_004682.1 + 47258 0.66 0.367632
Target:  5'- gUGAGUaCCGC-Cga--CGaGGCGGCACCg -3'
miRNA:   3'- -ACUCG-GGCGcGaugaGC-CCGCCGUGG- -5'
18660 5' -62 NC_004682.1 + 28777 0.66 0.367632
Target:  5'- --cGuCCCGCcgccGCcGCgagUGGGCGGCAUCg -3'
miRNA:   3'- acuC-GGGCG----CGaUGa--GCCCGCCGUGG- -5'
18660 5' -62 NC_004682.1 + 45902 0.66 0.367632
Target:  5'- cGAGUa-GCGC-ACUCGGGCu-CGCCg -3'
miRNA:   3'- aCUCGggCGCGaUGAGCCCGccGUGG- -5'
18660 5' -62 NC_004682.1 + 46464 0.66 0.366799
Target:  5'- cUGGGCCuugaCGCGCUcGCUCacggucuGGGCGaaGCCu -3'
miRNA:   3'- -ACUCGG----GCGCGA-UGAG-------CCCGCcgUGG- -5'
18660 5' -62 NC_004682.1 + 6338 0.66 0.358536
Target:  5'- cUGGGUCCGgGaCUccccgccgacacgGCgCGGGCGGUGCUc -3'
miRNA:   3'- -ACUCGGGCgC-GA-------------UGaGCCCGCCGUGG- -5'
18660 5' -62 NC_004682.1 + 8967 0.66 0.351211
Target:  5'- gGAGCuuGaggGCUucgGCUC-GGCGGgGCCg -3'
miRNA:   3'- aCUCGggCg--CGA---UGAGcCCGCCgUGG- -5'
18660 5' -62 NC_004682.1 + 20087 0.66 0.335317
Target:  5'- -cGGCCC-CGaUGCUCGGGa-GCGCCu -3'
miRNA:   3'- acUCGGGcGCgAUGAGCCCgcCGUGG- -5'
18660 5' -62 NC_004682.1 + 20031 0.66 0.335317
Target:  5'- gGGGCCgGCaacCUGacgguaUCGGGUGGC-CCa -3'
miRNA:   3'- aCUCGGgCGc--GAUg-----AGCCCGCCGuGG- -5'
18660 5' -62 NC_004682.1 + 10683 0.67 0.305126
Target:  5'- aGGGCCUGUGUacCUCGGG-GcCACCa -3'
miRNA:   3'- aCUCGGGCGCGauGAGCCCgCcGUGG- -5'
18660 5' -62 NC_004682.1 + 45972 0.67 0.297912
Target:  5'- cGAGCCCGagugcgGCUACUCGcGCuGGgACg -3'
miRNA:   3'- aCUCGGGCg-----CGAUGAGCcCG-CCgUGg -5'
18660 5' -62 NC_004682.1 + 128 0.67 0.290831
Target:  5'- aUGGGCUCGacCGCcgGCaCGGGCcGGCACa -3'
miRNA:   3'- -ACUCGGGC--GCGa-UGaGCCCG-CCGUGg -5'
18660 5' -62 NC_004682.1 + 48606 0.68 0.283882
Target:  5'- cGGGCaCCGCGUgGCguUCGGGaacuGCGCCu -3'
miRNA:   3'- aCUCG-GGCGCGaUG--AGCCCgc--CGUGG- -5'
18660 5' -62 NC_004682.1 + 4463 0.68 0.283882
Target:  5'- -cGGCaCCGCGCUccGCgccCGuGGCGGCGgCu -3'
miRNA:   3'- acUCG-GGCGCGA--UGa--GC-CCGCCGUgG- -5'
18660 5' -62 NC_004682.1 + 39897 0.68 0.283882
Target:  5'- aGAGCgCaGC-CgagGCaUCGGGCGGCGCg -3'
miRNA:   3'- aCUCGgG-CGcGa--UG-AGCCCGCCGUGg -5'
18660 5' -62 NC_004682.1 + 1835 0.68 0.277065
Target:  5'- --cGCCCguccggGCGuCUGCUCGGGCuccccGGCcCCa -3'
miRNA:   3'- acuCGGG------CGC-GAUGAGCCCG-----CCGuGG- -5'
18660 5' -62 NC_004682.1 + 4957 0.68 0.263177
Target:  5'- cGAcaCCCcCGgUGCUCGGGCGGUcuggaucGCCa -3'
miRNA:   3'- aCUc-GGGcGCgAUGAGCCCGCCG-------UGG- -5'
18660 5' -62 NC_004682.1 + 42529 0.68 0.257399
Target:  5'- cGAuguaCCCGaCGUgGCUC-GGCGGCGCCu -3'
miRNA:   3'- aCUc---GGGC-GCGaUGAGcCCGCCGUGG- -5'
18660 5' -62 NC_004682.1 + 17887 0.69 0.244933
Target:  5'- cGAGCCCGCcauCUGacccaUCGcGGUGGCgaggGCCg -3'
miRNA:   3'- aCUCGGGCGc--GAUg----AGC-CCGCCG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.