miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18661 3' -56 NC_004682.1 + 23255 0.66 0.705063
Target:  5'- cGGuggCCUGCgCGAgGAgcUGCG-GACGGa -3'
miRNA:   3'- -UCua-GGACG-GCUgCU--ACGCaCUGCCc -5'
18661 3' -56 NC_004682.1 + 48066 0.66 0.705063
Target:  5'- uAGuUCCaGUCGGCGAUGUcucGAUGGGu -3'
miRNA:   3'- -UCuAGGaCGGCUGCUACGca-CUGCCC- -5'
18661 3' -56 NC_004682.1 + 26634 0.66 0.705063
Target:  5'- gAGAUCCUG--GGCGAUGCG-GAUGa- -3'
miRNA:   3'- -UCUAGGACggCUGCUACGCaCUGCcc -5'
18661 3' -56 NC_004682.1 + 1545 0.66 0.705063
Target:  5'- aGGGUgCCUGCCGG-GAaGU-UGACGGGc -3'
miRNA:   3'- -UCUA-GGACGGCUgCUaCGcACUGCCC- -5'
18661 3' -56 NC_004682.1 + 17043 0.66 0.672809
Target:  5'- cAGAUCCU-CgCGAUGAUGCcgaugcucacGACGGGc -3'
miRNA:   3'- -UCUAGGAcG-GCUGCUACGca--------CUGCCC- -5'
18661 3' -56 NC_004682.1 + 32847 0.66 0.669561
Target:  5'- cAGAUCCUugaccGCUGGCGGUuCGUGGacgcccagcuccguCGGGu -3'
miRNA:   3'- -UCUAGGA-----CGGCUGCUAcGCACU--------------GCCC- -5'
18661 3' -56 NC_004682.1 + 2836 0.66 0.651101
Target:  5'- gGGAUCUgggUGCCGACGcggaacGCGUu-CGGGu -3'
miRNA:   3'- -UCUAGG---ACGGCUGCua----CGCAcuGCCC- -5'
18661 3' -56 NC_004682.1 + 41785 0.66 0.651101
Target:  5'- uGGAgaagUCgGCCagGGCGGUGCGUGA-GGGc -3'
miRNA:   3'- -UCUa---GGaCGG--CUGCUACGCACUgCCC- -5'
18661 3' -56 NC_004682.1 + 15309 0.67 0.604296
Target:  5'- cGGA-CCUuucgugaaaguuggGCgGGcCGAUGUGUGAUGGGg -3'
miRNA:   3'- -UCUaGGA--------------CGgCU-GCUACGCACUGCCC- -5'
18661 3' -56 NC_004682.1 + 35881 0.69 0.511564
Target:  5'- gAGA-CCUgGCCGgaaACGGUGCGgcgcguggucGACGGGa -3'
miRNA:   3'- -UCUaGGA-CGGC---UGCUACGCa---------CUGCCC- -5'
18661 3' -56 NC_004682.1 + 29085 0.71 0.385908
Target:  5'- -cGUCCUGCCGGgaGAUGUc-GGCGGGg -3'
miRNA:   3'- ucUAGGACGGCUg-CUACGcaCUGCCC- -5'
18661 3' -56 NC_004682.1 + 5173 1.1 0.000813
Target:  5'- gAGAUCCUGCCGACGAUGCGUGACGGGc -3'
miRNA:   3'- -UCUAGGACGGCUGCUACGCACUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.