miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18661 5' -57.8 NC_004682.1 + 33198 0.66 0.599884
Target:  5'- -aCCGACUcgggGaCACCAUCGUCGGCUGa- -3'
miRNA:   3'- ccGGCUGA----C-GUGGUGGCAGUUGGCcu -5'
18661 5' -57.8 NC_004682.1 + 35321 0.66 0.599884
Target:  5'- cGGCaCGGCcucgggGcCGCUGCCGUUGGCuCGGAu -3'
miRNA:   3'- -CCG-GCUGa-----C-GUGGUGGCAGUUG-GCCU- -5'
18661 5' -57.8 NC_004682.1 + 28310 0.66 0.599883
Target:  5'- cGGCaugGACUGCcacgcaucgacccacGCCGCUGUCGuagucgcuaacucCCGGAa -3'
miRNA:   3'- -CCGg--CUGACG---------------UGGUGGCAGUu------------GGCCU- -5'
18661 5' -57.8 NC_004682.1 + 38923 0.66 0.599883
Target:  5'- cGCC-ACcGCGCUGCCcUUGACCGGAc -3'
miRNA:   3'- cCGGcUGaCGUGGUGGcAGUUGGCCU- -5'
18661 5' -57.8 NC_004682.1 + 36561 0.66 0.589144
Target:  5'- cGCCGccCUGCggcuuGCCGCCGUCGGagucguagguCUGGAc -3'
miRNA:   3'- cCGGCu-GACG-----UGGUGGCAGUU----------GGCCU- -5'
18661 5' -57.8 NC_004682.1 + 33151 0.66 0.578439
Target:  5'- aGGCCGcaACUGCuACCGauCCuUCAGCCGu- -3'
miRNA:   3'- -CCGGC--UGACG-UGGU--GGcAGUUGGCcu -5'
18661 5' -57.8 NC_004682.1 + 34183 0.66 0.578439
Target:  5'- gGGCUGACaacGCgguguccuucACCGCCaacGUCGACCcGGAg -3'
miRNA:   3'- -CCGGCUGa--CG----------UGGUGG---CAGUUGG-CCU- -5'
18661 5' -57.8 NC_004682.1 + 25658 0.66 0.578439
Target:  5'- aGCCGccaGC-GCACaCACC-UCAGCCGGu -3'
miRNA:   3'- cCGGC---UGaCGUG-GUGGcAGUUGGCCu -5'
18661 5' -57.8 NC_004682.1 + 7098 0.66 0.567777
Target:  5'- gGGCCuACguggGCACgCACUGUCGACggCGGc -3'
miRNA:   3'- -CCGGcUGa---CGUG-GUGGCAGUUG--GCCu -5'
18661 5' -57.8 NC_004682.1 + 4754 0.66 0.567777
Target:  5'- aGGCCGACguagucgGUGCCGucgcggUCGUCAccccguCCGGGg -3'
miRNA:   3'- -CCGGCUGa------CGUGGU------GGCAGUu-----GGCCU- -5'
18661 5' -57.8 NC_004682.1 + 569 0.66 0.567777
Target:  5'- aGGgCGGCgcgucggugaGCGCCGCCGgaagCGGCCcuGGAg -3'
miRNA:   3'- -CCgGCUGa---------CGUGGUGGCa---GUUGG--CCU- -5'
18661 5' -57.8 NC_004682.1 + 41189 0.66 0.567777
Target:  5'- -aCCGACUGCACCAgcagauccUCGgCGACCuGAu -3'
miRNA:   3'- ccGGCUGACGUGGU--------GGCaGUUGGcCU- -5'
18661 5' -57.8 NC_004682.1 + 47250 0.66 0.557165
Target:  5'- cGCCGACgagGCGgCACCGaCGgaggccacAUCGGAg -3'
miRNA:   3'- cCGGCUGa--CGUgGUGGCaGU--------UGGCCU- -5'
18661 5' -57.8 NC_004682.1 + 24189 0.66 0.557165
Target:  5'- aGG-UGGCUGCACCGuuGUUgaugcugauguAGCCGGu -3'
miRNA:   3'- -CCgGCUGACGUGGUggCAG-----------UUGGCCu -5'
18661 5' -57.8 NC_004682.1 + 25392 0.66 0.553992
Target:  5'- cGUCGGCUGCAgaucguuguacugcUCACCGUCuggGCCGc- -3'
miRNA:   3'- cCGGCUGACGU--------------GGUGGCAGu--UGGCcu -5'
18661 5' -57.8 NC_004682.1 + 25210 0.67 0.536121
Target:  5'- uGGCgaGGCUGuCGgCACCGUacggcgcgAGCCGGAg -3'
miRNA:   3'- -CCGg-CUGAC-GUgGUGGCAg-------UUGGCCU- -5'
18661 5' -57.8 NC_004682.1 + 35106 0.67 0.525702
Target:  5'- cGCUGACcgGCGCaCACCGcCGGCCa-- -3'
miRNA:   3'- cCGGCUGa-CGUG-GUGGCaGUUGGccu -5'
18661 5' -57.8 NC_004682.1 + 47468 0.67 0.515361
Target:  5'- -uCCGACgaagGCgucAUCGCCGUCAACUGaGAg -3'
miRNA:   3'- ccGGCUGa---CG---UGGUGGCAGUUGGC-CU- -5'
18661 5' -57.8 NC_004682.1 + 7304 0.67 0.51536
Target:  5'- gGGCaucCUGCGCCGCC-UCAaggGCUGGGg -3'
miRNA:   3'- -CCGgcuGACGUGGUGGcAGU---UGGCCU- -5'
18661 5' -57.8 NC_004682.1 + 30718 0.67 0.505103
Target:  5'- cGGCCaGGaaGCACCGCCGcacCAGCCa-- -3'
miRNA:   3'- -CCGG-CUgaCGUGGUGGCa--GUUGGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.