miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18663 3' -59.1 NC_004682.1 + 32897 0.66 0.488329
Target:  5'- gAUCGACGCGCcgGgacGCGGCUacuuCCGCGc -3'
miRNA:   3'- -UAGUUGCGCGa-Ca--CGCUGGc---GGCGCu -5'
18663 3' -59.1 NC_004682.1 + 28192 0.66 0.478255
Target:  5'- uUCGAgGUcuCUGUccGCGcucGCCGCCGCGAg -3'
miRNA:   3'- uAGUUgCGc-GACA--CGC---UGGCGGCGCU- -5'
18663 3' -59.1 NC_004682.1 + 20040 0.66 0.448673
Target:  5'- -gCAGuCGCGUUGcggGCGAUgGCCGCu- -3'
miRNA:   3'- uaGUU-GCGCGACa--CGCUGgCGGCGcu -5'
18663 3' -59.1 NC_004682.1 + 36597 0.67 0.433315
Target:  5'- cAUCAACGCgGCgguccucgaccuccGUGCGGCucuggaggCGCUGCGAg -3'
miRNA:   3'- -UAGUUGCG-CGa-------------CACGCUG--------GCGGCGCU- -5'
18663 3' -59.1 NC_004682.1 + 19962 0.67 0.410863
Target:  5'- -aCAGCGgccaucgccCGCaacGCGACUGCCGCGAc -3'
miRNA:   3'- uaGUUGC---------GCGacaCGCUGGCGGCGCU- -5'
18663 3' -59.1 NC_004682.1 + 18802 0.67 0.401723
Target:  5'- cGUCGAUGCGCUGcUGgagGGCUGCCuucGCGGc -3'
miRNA:   3'- -UAGUUGCGCGAC-ACg--CUGGCGG---CGCU- -5'
18663 3' -59.1 NC_004682.1 + 15362 0.68 0.383837
Target:  5'- -gCAACGUGCUccGCauucagaaGACgCGCCGCGAa -3'
miRNA:   3'- uaGUUGCGCGAcaCG--------CUG-GCGGCGCU- -5'
18663 3' -59.1 NC_004682.1 + 49377 0.68 0.341493
Target:  5'- cGUCAACGCacGCg--GCGACgUGCUGCGGg -3'
miRNA:   3'- -UAGUUGCG--CGacaCGCUG-GCGGCGCU- -5'
18663 3' -59.1 NC_004682.1 + 2672 0.69 0.325526
Target:  5'- -aCGACGCGCUGUcccCGAagGUCGCGAc -3'
miRNA:   3'- uaGUUGCGCGACAc--GCUggCGGCGCU- -5'
18663 3' -59.1 NC_004682.1 + 47601 0.73 0.181017
Target:  5'- --gGACGCGCUG-GCGACCgGCCuCGGa -3'
miRNA:   3'- uagUUGCGCGACaCGCUGG-CGGcGCU- -5'
18663 3' -59.1 NC_004682.1 + 4354 0.75 0.127189
Target:  5'- -cCAAgGCGCUG-GUGACCGCCGUc- -3'
miRNA:   3'- uaGUUgCGCGACaCGCUGGCGGCGcu -5'
18663 3' -59.1 NC_004682.1 + 9672 0.77 0.086047
Target:  5'- cUCGACGCGCUGgaucGCaaGGCUGCCGCGu -3'
miRNA:   3'- uAGUUGCGCGACa---CG--CUGGCGGCGCu -5'
18663 3' -59.1 NC_004682.1 + 5511 1.06 0.000577
Target:  5'- cAUCAACGCGCUGUGCGACCGCCGCGAc -3'
miRNA:   3'- -UAGUUGCGCGACACGCUGGCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.