miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18663 5' -54.8 NC_004682.1 + 17812 0.66 0.788785
Target:  5'- ----cCGCGAUGGGUCAgaugGCGGGcuCGGu -3'
miRNA:   3'- ccagaGCGCUGCCUAGU----UGCCCu-GCU- -5'
18663 5' -54.8 NC_004682.1 + 49680 0.66 0.778989
Target:  5'- aGGUuugcaCUCGC-ACGGAuUCAACuGGGcCGAg -3'
miRNA:   3'- -CCA-----GAGCGcUGCCU-AGUUG-CCCuGCU- -5'
18663 5' -54.8 NC_004682.1 + 29955 0.66 0.778989
Target:  5'- aGGUCUgGCG--GGA---GCGGGugGAg -3'
miRNA:   3'- -CCAGAgCGCugCCUaguUGCCCugCU- -5'
18663 5' -54.8 NC_004682.1 + 42094 0.66 0.77304
Target:  5'- cGGacUCUCGCugggcaucuucaucgGACuGAUCAcuGCGGGGCGc -3'
miRNA:   3'- -CC--AGAGCG---------------CUGcCUAGU--UGCCCUGCu -5'
18663 5' -54.8 NC_004682.1 + 28104 0.66 0.748754
Target:  5'- uGGcugCUCGCGGCGGcg-AGCGcGGACa- -3'
miRNA:   3'- -CCa--GAGCGCUGCCuagUUGC-CCUGcu -5'
18663 5' -54.8 NC_004682.1 + 29590 0.66 0.748754
Target:  5'- cGUCgucaGCGACGG-UCAcgcgguacGCGGGGCu- -3'
miRNA:   3'- cCAGag--CGCUGCCuAGU--------UGCCCUGcu -5'
18663 5' -54.8 NC_004682.1 + 20213 0.67 0.685454
Target:  5'- cGGUCa-GCGACgagaccgcuuGGAUCAACGGcuguggcagaccGGCGAa -3'
miRNA:   3'- -CCAGagCGCUG----------CCUAGUUGCC------------CUGCU- -5'
18663 5' -54.8 NC_004682.1 + 44406 0.67 0.685454
Target:  5'- cGGUUcCGCuacGCGGA-CGACGGGAuCGGg -3'
miRNA:   3'- -CCAGaGCGc--UGCCUaGUUGCCCU-GCU- -5'
18663 5' -54.8 NC_004682.1 + 21619 0.68 0.642107
Target:  5'- -aUCUCgGCGGCGGugaaCAugGGaGGCGAc -3'
miRNA:   3'- ccAGAG-CGCUGCCua--GUugCC-CUGCU- -5'
18663 5' -54.8 NC_004682.1 + 46882 0.7 0.555559
Target:  5'- uGGUCU-GCc-CGGAUCGACGGGAa-- -3'
miRNA:   3'- -CCAGAgCGcuGCCUAGUUGCCCUgcu -5'
18663 5' -54.8 NC_004682.1 + 17329 0.7 0.555559
Target:  5'- gGGUCUCGCaGaACGGcGUCAuggACGGcGCGAu -3'
miRNA:   3'- -CCAGAGCG-C-UGCC-UAGU---UGCCcUGCU- -5'
18663 5' -54.8 NC_004682.1 + 27470 0.73 0.361559
Target:  5'- cGGacCUCGCGACGGA-CAACGGcGuguCGAg -3'
miRNA:   3'- -CCa-GAGCGCUGCCUaGUUGCC-Cu--GCU- -5'
18663 5' -54.8 NC_004682.1 + 28707 0.81 0.114903
Target:  5'- --aCUCGCGGCGG--CGGCGGGACGAa -3'
miRNA:   3'- ccaGAGCGCUGCCuaGUUGCCCUGCU- -5'
18663 5' -54.8 NC_004682.1 + 5546 1.12 0.000872
Target:  5'- cGGUCUCGCGACGGAUCAACGGGACGAa -3'
miRNA:   3'- -CCAGAGCGCUGCCUAGUUGCCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.