miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18664 5' -53.1 NC_004682.1 + 39761 0.66 0.841465
Target:  5'- -gGGGGCCGGAU---GACGCUGC-CGc -3'
miRNA:   3'- ggUCUUGGUCUAgcuCUGCGACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 47056 0.66 0.832511
Target:  5'- gCAGAAgCAGGUCGccaaGCUGCUgCGc -3'
miRNA:   3'- gGUCUUgGUCUAGCucugCGACGA-GC- -5'
18664 5' -53.1 NC_004682.1 + 15002 0.66 0.823339
Target:  5'- aCCAGGaacGCCuucucGUCGGGuCGCcGCUCGc -3'
miRNA:   3'- -GGUCU---UGGuc---UAGCUCuGCGaCGAGC- -5'
18664 5' -53.1 NC_004682.1 + 20357 0.66 0.814909
Target:  5'- cCCAGAGCUGGcugccguucuccgaCGAGAC-CUGCUCc -3'
miRNA:   3'- -GGUCUUGGUCua------------GCUCUGcGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 1381 0.66 0.813962
Target:  5'- -gGGAACCGGAgagGGGACG--GCUCGa -3'
miRNA:   3'- ggUCUUGGUCUag-CUCUGCgaCGAGC- -5'
18664 5' -53.1 NC_004682.1 + 31096 0.66 0.813962
Target:  5'- cCCcGAuCCAGGUcgcCGAGGCGCUGaugCGc -3'
miRNA:   3'- -GGuCUuGGUCUA---GCUCUGCGACga-GC- -5'
18664 5' -53.1 NC_004682.1 + 6343 0.66 0.813962
Target:  5'- uCCGGGACUccccgccgacacGGcgCG-GGCGgUGCUCGa -3'
miRNA:   3'- -GGUCUUGG------------UCuaGCuCUGCgACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 29987 0.67 0.794632
Target:  5'- uCCAGGaacugcGCCGGAUCG--GCGC-GUUCGg -3'
miRNA:   3'- -GGUCU------UGGUCUAGCucUGCGaCGAGC- -5'
18664 5' -53.1 NC_004682.1 + 21949 0.67 0.79167
Target:  5'- aCCAGGgccacacggcccacACCAucaagguGUCG-GACGCUGCUCc -3'
miRNA:   3'- -GGUCU--------------UGGUc------UAGCuCUGCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 1469 0.67 0.784701
Target:  5'- gCCAGAggACCAG--CGAGuCGCUG-UCGa -3'
miRNA:   3'- -GGUCU--UGGUCuaGCUCuGCGACgAGC- -5'
18664 5' -53.1 NC_004682.1 + 46467 0.67 0.784701
Target:  5'- aCCGGGGCgAcAagGAGcGCGCUGCUCu -3'
miRNA:   3'- -GGUCUUGgUcUagCUC-UGCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 36331 0.67 0.774606
Target:  5'- gCCAGGGCCGucGUCGcggguGACG-UGCUCGa -3'
miRNA:   3'- -GGUCUUGGUc-UAGCu----CUGCgACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 13403 0.67 0.764362
Target:  5'- cCCAGuggauucGCCAG-UCGuGGACGCaguggUGCUCGc -3'
miRNA:   3'- -GGUCu------UGGUCuAGC-UCUGCG-----ACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 17090 0.67 0.753977
Target:  5'- --cGAACUGGGgcUUGAGGCcCUGCUCGa -3'
miRNA:   3'- gguCUUGGUCU--AGCUCUGcGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 36509 0.67 0.753977
Target:  5'- uCCAGAGCCgcacggAGGUCGAGGacCGCcGCgUUGa -3'
miRNA:   3'- -GGUCUUGG------UCUAGCUCU--GCGaCG-AGC- -5'
18664 5' -53.1 NC_004682.1 + 12353 0.67 0.743466
Target:  5'- cCCAGGAUgcggcccucaCGGAUCGcgccGAC-CUGCUCGg -3'
miRNA:   3'- -GGUCUUG----------GUCUAGCu---CUGcGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 40948 0.68 0.722109
Target:  5'- gCCcGGACCAcGAUCGGaACGC-GCUCa -3'
miRNA:   3'- -GGuCUUGGU-CUAGCUcUGCGaCGAGc -5'
18664 5' -53.1 NC_004682.1 + 43214 0.68 0.689416
Target:  5'- gCCuGGACCGGAgCGuGGCGgCUGC-CGa -3'
miRNA:   3'- -GGuCUUGGUCUaGCuCUGC-GACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 10404 0.68 0.689416
Target:  5'- cCCGGAGCUGGAccccaaCGAGAgGUUGCUg- -3'
miRNA:   3'- -GGUCUUGGUCUa-----GCUCUgCGACGAgc -5'
18664 5' -53.1 NC_004682.1 + 9538 0.69 0.682806
Target:  5'- -aGGAGCUGGGcgUCGAccccgagaccggccaGACGCUGUUCGa -3'
miRNA:   3'- ggUCUUGGUCU--AGCU---------------CUGCGACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.