miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18664 5' -53.1 NC_004682.1 + 5771 1.12 0.000976
Target:  5'- aCCAGAACCAGAUCGAGACGCUGCUCGg -3'
miRNA:   3'- -GGUCUUGGUCUAGCUCUGCGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 3653 0.76 0.289563
Target:  5'- uCCAGGccacgguaggcacguACCGGAUCGAGAUGCggagGUUCu -3'
miRNA:   3'- -GGUCU---------------UGGUCUAGCUCUGCGa---CGAGc -5'
18664 5' -53.1 NC_004682.1 + 20028 0.72 0.480903
Target:  5'- aUCGGGGCCGGcaaccugacgguAUCGGGuggcccaACGCUGCUCa -3'
miRNA:   3'- -GGUCUUGGUC------------UAGCUC-------UGCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 7465 0.72 0.502781
Target:  5'- gCCAGGACCAGA-CGAaGAacacguucuCGCUGUUCc -3'
miRNA:   3'- -GGUCUUGGUCUaGCU-CU---------GCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 11135 0.71 0.52401
Target:  5'- gCCAgGAGCCgaAGGUCGAGACGUUcaGC-CGg -3'
miRNA:   3'- -GGU-CUUGG--UCUAGCUCUGCGA--CGaGC- -5'
18664 5' -53.1 NC_004682.1 + 32914 0.71 0.52401
Target:  5'- aCCgAGAACgaCAGGUgcCGGGACGCUccaGCUCGg -3'
miRNA:   3'- -GG-UCUUG--GUCUA--GCUCUGCGA---CGAGC- -5'
18664 5' -53.1 NC_004682.1 + 31034 0.7 0.567414
Target:  5'- aCCGGccAGCCgaAGGUCGAcaaGGUGCUGCUCGa -3'
miRNA:   3'- -GGUC--UUGG--UCUAGCU---CUGCGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 20396 0.7 0.588362
Target:  5'- gCGGGACCGGGUUGuggaaccGGACGCcGUUCa -3'
miRNA:   3'- gGUCUUGGUCUAGC-------UCUGCGaCGAGc -5'
18664 5' -53.1 NC_004682.1 + 13078 0.7 0.616123
Target:  5'- uCCGGGucggugaccuuggugGCCAGGUcCGGGAUGCgccGCUUGa -3'
miRNA:   3'- -GGUCU---------------UGGUCUA-GCUCUGCGa--CGAGC- -5'
18664 5' -53.1 NC_004682.1 + 26286 0.69 0.645086
Target:  5'- aCCGGAcguACCGcugcGGUCG-GACGCcGCUCa -3'
miRNA:   3'- -GGUCU---UGGU----CUAGCuCUGCGaCGAGc -5'
18664 5' -53.1 NC_004682.1 + 14950 0.69 0.652877
Target:  5'- aCCAGG-CguGGUCGAGGCGUUcgcgccguaguacaGCUCa -3'
miRNA:   3'- -GGUCUuGguCUAGCUCUGCGA--------------CGAGc -5'
18664 5' -53.1 NC_004682.1 + 24640 0.69 0.656214
Target:  5'- uCCGGuGCCAGGaugUCGAGGCG-UGC-CGg -3'
miRNA:   3'- -GGUCuUGGUCU---AGCUCUGCgACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 17719 0.69 0.667319
Target:  5'- uCCAGccgaugauccccGGCCuGGUCGAGAacuuCGCUcaGCUCGg -3'
miRNA:   3'- -GGUC------------UUGGuCUAGCUCU----GCGA--CGAGC- -5'
18664 5' -53.1 NC_004682.1 + 24090 0.69 0.67839
Target:  5'- aCCGGAcgaugaacgACCGGccCGAG-UGCUGCUCu -3'
miRNA:   3'- -GGUCU---------UGGUCuaGCUCuGCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 9538 0.69 0.682806
Target:  5'- -aGGAGCUGGGcgUCGAccccgagaccggccaGACGCUGUUCGa -3'
miRNA:   3'- ggUCUUGGUCU--AGCU---------------CUGCGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 43214 0.68 0.689416
Target:  5'- gCCuGGACCGGAgCGuGGCGgCUGC-CGa -3'
miRNA:   3'- -GGuCUUGGUCUaGCuCUGC-GACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 10404 0.68 0.689416
Target:  5'- cCCGGAGCUGGAccccaaCGAGAgGUUGCUg- -3'
miRNA:   3'- -GGUCUUGGUCUa-----GCUCUgCGACGAgc -5'
18664 5' -53.1 NC_004682.1 + 40948 0.68 0.722109
Target:  5'- gCCcGGACCAcGAUCGGaACGC-GCUCa -3'
miRNA:   3'- -GGuCUUGGU-CUAGCUcUGCGaCGAGc -5'
18664 5' -53.1 NC_004682.1 + 12353 0.67 0.743466
Target:  5'- cCCAGGAUgcggcccucaCGGAUCGcgccGAC-CUGCUCGg -3'
miRNA:   3'- -GGUCUUG----------GUCUAGCu---CUGcGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 36509 0.67 0.753977
Target:  5'- uCCAGAGCCgcacggAGGUCGAGGacCGCcGCgUUGa -3'
miRNA:   3'- -GGUCUUGG------UCUAGCUCU--GCGaCG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.