Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18664 | 5' | -53.1 | NC_004682.1 | + | 24090 | 0.69 | 0.67839 |
Target: 5'- aCCGGAcgaugaacgACCGGccCGAG-UGCUGCUCu -3' miRNA: 3'- -GGUCU---------UGGUCuaGCUCuGCGACGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 17719 | 0.69 | 0.667319 |
Target: 5'- uCCAGccgaugauccccGGCCuGGUCGAGAacuuCGCUcaGCUCGg -3' miRNA: 3'- -GGUC------------UUGGuCUAGCUCU----GCGA--CGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 24640 | 0.69 | 0.656214 |
Target: 5'- uCCGGuGCCAGGaugUCGAGGCG-UGC-CGg -3' miRNA: 3'- -GGUCuUGGUCU---AGCUCUGCgACGaGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 14950 | 0.69 | 0.652877 |
Target: 5'- aCCAGG-CguGGUCGAGGCGUUcgcgccguaguacaGCUCa -3' miRNA: 3'- -GGUCUuGguCUAGCUCUGCGA--------------CGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 26286 | 0.69 | 0.645086 |
Target: 5'- aCCGGAcguACCGcugcGGUCG-GACGCcGCUCa -3' miRNA: 3'- -GGUCU---UGGU----CUAGCuCUGCGaCGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 13078 | 0.7 | 0.616123 |
Target: 5'- uCCGGGucggugaccuuggugGCCAGGUcCGGGAUGCgccGCUUGa -3' miRNA: 3'- -GGUCU---------------UGGUCUA-GCUCUGCGa--CGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 20396 | 0.7 | 0.588362 |
Target: 5'- gCGGGACCGGGUUGuggaaccGGACGCcGUUCa -3' miRNA: 3'- gGUCUUGGUCUAGC-------UCUGCGaCGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 31034 | 0.7 | 0.567414 |
Target: 5'- aCCGGccAGCCgaAGGUCGAcaaGGUGCUGCUCGa -3' miRNA: 3'- -GGUC--UUGG--UCUAGCU---CUGCGACGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 32914 | 0.71 | 0.52401 |
Target: 5'- aCCgAGAACgaCAGGUgcCGGGACGCUccaGCUCGg -3' miRNA: 3'- -GG-UCUUG--GUCUA--GCUCUGCGA---CGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 11135 | 0.71 | 0.52401 |
Target: 5'- gCCAgGAGCCgaAGGUCGAGACGUUcaGC-CGg -3' miRNA: 3'- -GGU-CUUGG--UCUAGCUCUGCGA--CGaGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 7465 | 0.72 | 0.502781 |
Target: 5'- gCCAGGACCAGA-CGAaGAacacguucuCGCUGUUCc -3' miRNA: 3'- -GGUCUUGGUCUaGCU-CU---------GCGACGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 20028 | 0.72 | 0.480903 |
Target: 5'- aUCGGGGCCGGcaaccugacgguAUCGGGuggcccaACGCUGCUCa -3' miRNA: 3'- -GGUCUUGGUC------------UAGCUC-------UGCGACGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 3653 | 0.76 | 0.289563 |
Target: 5'- uCCAGGccacgguaggcacguACCGGAUCGAGAUGCggagGUUCu -3' miRNA: 3'- -GGUCU---------------UGGUCUAGCUCUGCGa---CGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 5771 | 1.12 | 0.000976 |
Target: 5'- aCCAGAACCAGAUCGAGACGCUGCUCGg -3' miRNA: 3'- -GGUCUUGGUCUAGCUCUGCGACGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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