Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18664 | 5' | -53.1 | NC_004682.1 | + | 1381 | 0.66 | 0.813962 |
Target: 5'- -gGGAACCGGAgagGGGACG--GCUCGa -3' miRNA: 3'- ggUCUUGGUCUag-CUCUGCgaCGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 1469 | 0.67 | 0.784701 |
Target: 5'- gCCAGAggACCAG--CGAGuCGCUG-UCGa -3' miRNA: 3'- -GGUCU--UGGUCuaGCUCuGCGACgAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 3653 | 0.76 | 0.289563 |
Target: 5'- uCCAGGccacgguaggcacguACCGGAUCGAGAUGCggagGUUCu -3' miRNA: 3'- -GGUCU---------------UGGUCUAGCUCUGCGa---CGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 5771 | 1.12 | 0.000976 |
Target: 5'- aCCAGAACCAGAUCGAGACGCUGCUCGg -3' miRNA: 3'- -GGUCUUGGUCUAGCUCUGCGACGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 6343 | 0.66 | 0.813962 |
Target: 5'- uCCGGGACUccccgccgacacGGcgCG-GGCGgUGCUCGa -3' miRNA: 3'- -GGUCUUGG------------UCuaGCuCUGCgACGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 7465 | 0.72 | 0.502781 |
Target: 5'- gCCAGGACCAGA-CGAaGAacacguucuCGCUGUUCc -3' miRNA: 3'- -GGUCUUGGUCUaGCU-CU---------GCGACGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 9538 | 0.69 | 0.682806 |
Target: 5'- -aGGAGCUGGGcgUCGAccccgagaccggccaGACGCUGUUCGa -3' miRNA: 3'- ggUCUUGGUCU--AGCU---------------CUGCGACGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 10404 | 0.68 | 0.689416 |
Target: 5'- cCCGGAGCUGGAccccaaCGAGAgGUUGCUg- -3' miRNA: 3'- -GGUCUUGGUCUa-----GCUCUgCGACGAgc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 11135 | 0.71 | 0.52401 |
Target: 5'- gCCAgGAGCCgaAGGUCGAGACGUUcaGC-CGg -3' miRNA: 3'- -GGU-CUUGG--UCUAGCUCUGCGA--CGaGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 12353 | 0.67 | 0.743466 |
Target: 5'- cCCAGGAUgcggcccucaCGGAUCGcgccGAC-CUGCUCGg -3' miRNA: 3'- -GGUCUUG----------GUCUAGCu---CUGcGACGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 13078 | 0.7 | 0.616123 |
Target: 5'- uCCGGGucggugaccuuggugGCCAGGUcCGGGAUGCgccGCUUGa -3' miRNA: 3'- -GGUCU---------------UGGUCUA-GCUCUGCGa--CGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 13403 | 0.67 | 0.764362 |
Target: 5'- cCCAGuggauucGCCAG-UCGuGGACGCaguggUGCUCGc -3' miRNA: 3'- -GGUCu------UGGUCuAGC-UCUGCG-----ACGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 14950 | 0.69 | 0.652877 |
Target: 5'- aCCAGG-CguGGUCGAGGCGUUcgcgccguaguacaGCUCa -3' miRNA: 3'- -GGUCUuGguCUAGCUCUGCGA--------------CGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 15002 | 0.66 | 0.823339 |
Target: 5'- aCCAGGaacGCCuucucGUCGGGuCGCcGCUCGc -3' miRNA: 3'- -GGUCU---UGGuc---UAGCUCuGCGaCGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 17090 | 0.67 | 0.753977 |
Target: 5'- --cGAACUGGGgcUUGAGGCcCUGCUCGa -3' miRNA: 3'- gguCUUGGUCU--AGCUCUGcGACGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 17719 | 0.69 | 0.667319 |
Target: 5'- uCCAGccgaugauccccGGCCuGGUCGAGAacuuCGCUcaGCUCGg -3' miRNA: 3'- -GGUC------------UUGGuCUAGCUCU----GCGA--CGAGC- -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 20028 | 0.72 | 0.480903 |
Target: 5'- aUCGGGGCCGGcaaccugacgguAUCGGGuggcccaACGCUGCUCa -3' miRNA: 3'- -GGUCUUGGUC------------UAGCUC-------UGCGACGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 20357 | 0.66 | 0.814909 |
Target: 5'- cCCAGAGCUGGcugccguucuccgaCGAGAC-CUGCUCc -3' miRNA: 3'- -GGUCUUGGUCua------------GCUCUGcGACGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 20396 | 0.7 | 0.588362 |
Target: 5'- gCGGGACCGGGUUGuggaaccGGACGCcGUUCa -3' miRNA: 3'- gGUCUUGGUCUAGC-------UCUGCGaCGAGc -5' |
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18664 | 5' | -53.1 | NC_004682.1 | + | 21949 | 0.67 | 0.79167 |
Target: 5'- aCCAGGgccacacggcccacACCAucaagguGUCG-GACGCUGCUCc -3' miRNA: 3'- -GGUCU--------------UGGUc------UAGCuCUGCGACGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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