miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18664 5' -53.1 NC_004682.1 + 24090 0.69 0.67839
Target:  5'- aCCGGAcgaugaacgACCGGccCGAG-UGCUGCUCu -3'
miRNA:   3'- -GGUCU---------UGGUCuaGCUCuGCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 24640 0.69 0.656214
Target:  5'- uCCGGuGCCAGGaugUCGAGGCG-UGC-CGg -3'
miRNA:   3'- -GGUCuUGGUCU---AGCUCUGCgACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 26286 0.69 0.645086
Target:  5'- aCCGGAcguACCGcugcGGUCG-GACGCcGCUCa -3'
miRNA:   3'- -GGUCU---UGGU----CUAGCuCUGCGaCGAGc -5'
18664 5' -53.1 NC_004682.1 + 29987 0.67 0.794632
Target:  5'- uCCAGGaacugcGCCGGAUCG--GCGC-GUUCGg -3'
miRNA:   3'- -GGUCU------UGGUCUAGCucUGCGaCGAGC- -5'
18664 5' -53.1 NC_004682.1 + 31034 0.7 0.567414
Target:  5'- aCCGGccAGCCgaAGGUCGAcaaGGUGCUGCUCGa -3'
miRNA:   3'- -GGUC--UUGG--UCUAGCU---CUGCGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 31096 0.66 0.813962
Target:  5'- cCCcGAuCCAGGUcgcCGAGGCGCUGaugCGc -3'
miRNA:   3'- -GGuCUuGGUCUA---GCUCUGCGACga-GC- -5'
18664 5' -53.1 NC_004682.1 + 32914 0.71 0.52401
Target:  5'- aCCgAGAACgaCAGGUgcCGGGACGCUccaGCUCGg -3'
miRNA:   3'- -GG-UCUUG--GUCUA--GCUCUGCGA---CGAGC- -5'
18664 5' -53.1 NC_004682.1 + 36331 0.67 0.774606
Target:  5'- gCCAGGGCCGucGUCGcggguGACG-UGCUCGa -3'
miRNA:   3'- -GGUCUUGGUc-UAGCu----CUGCgACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 36509 0.67 0.753977
Target:  5'- uCCAGAGCCgcacggAGGUCGAGGacCGCcGCgUUGa -3'
miRNA:   3'- -GGUCUUGG------UCUAGCUCU--GCGaCG-AGC- -5'
18664 5' -53.1 NC_004682.1 + 39761 0.66 0.841465
Target:  5'- -gGGGGCCGGAU---GACGCUGC-CGc -3'
miRNA:   3'- ggUCUUGGUCUAgcuCUGCGACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 40948 0.68 0.722109
Target:  5'- gCCcGGACCAcGAUCGGaACGC-GCUCa -3'
miRNA:   3'- -GGuCUUGGU-CUAGCUcUGCGaCGAGc -5'
18664 5' -53.1 NC_004682.1 + 43214 0.68 0.689416
Target:  5'- gCCuGGACCGGAgCGuGGCGgCUGC-CGa -3'
miRNA:   3'- -GGuCUUGGUCUaGCuCUGC-GACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 46467 0.67 0.784701
Target:  5'- aCCGGGGCgAcAagGAGcGCGCUGCUCu -3'
miRNA:   3'- -GGUCUUGgUcUagCUC-UGCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 47056 0.66 0.832511
Target:  5'- gCAGAAgCAGGUCGccaaGCUGCUgCGc -3'
miRNA:   3'- gGUCUUgGUCUAGCucugCGACGA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.