miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18664 5' -53.1 NC_004682.1 + 1469 0.67 0.784701
Target:  5'- gCCAGAggACCAG--CGAGuCGCUG-UCGa -3'
miRNA:   3'- -GGUCU--UGGUCuaGCUCuGCGACgAGC- -5'
18664 5' -53.1 NC_004682.1 + 31034 0.7 0.567414
Target:  5'- aCCGGccAGCCgaAGGUCGAcaaGGUGCUGCUCGa -3'
miRNA:   3'- -GGUC--UUGG--UCUAGCU---CUGCGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 39761 0.66 0.841465
Target:  5'- -gGGGGCCGGAU---GACGCUGC-CGc -3'
miRNA:   3'- ggUCUUGGUCUAgcuCUGCGACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 47056 0.66 0.832511
Target:  5'- gCAGAAgCAGGUCGccaaGCUGCUgCGc -3'
miRNA:   3'- gGUCUUgGUCUAGCucugCGACGA-GC- -5'
18664 5' -53.1 NC_004682.1 + 15002 0.66 0.823339
Target:  5'- aCCAGGaacGCCuucucGUCGGGuCGCcGCUCGc -3'
miRNA:   3'- -GGUCU---UGGuc---UAGCUCuGCGaCGAGC- -5'
18664 5' -53.1 NC_004682.1 + 20357 0.66 0.814909
Target:  5'- cCCAGAGCUGGcugccguucuccgaCGAGAC-CUGCUCc -3'
miRNA:   3'- -GGUCUUGGUCua------------GCUCUGcGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 31096 0.66 0.813962
Target:  5'- cCCcGAuCCAGGUcgcCGAGGCGCUGaugCGc -3'
miRNA:   3'- -GGuCUuGGUCUA---GCUCUGCGACga-GC- -5'
18664 5' -53.1 NC_004682.1 + 1381 0.66 0.813962
Target:  5'- -gGGAACCGGAgagGGGACG--GCUCGa -3'
miRNA:   3'- ggUCUUGGUCUag-CUCUGCgaCGAGC- -5'
18664 5' -53.1 NC_004682.1 + 29987 0.67 0.794632
Target:  5'- uCCAGGaacugcGCCGGAUCG--GCGC-GUUCGg -3'
miRNA:   3'- -GGUCU------UGGUCUAGCucUGCGaCGAGC- -5'
18664 5' -53.1 NC_004682.1 + 20396 0.7 0.588362
Target:  5'- gCGGGACCGGGUUGuggaaccGGACGCcGUUCa -3'
miRNA:   3'- gGUCUUGGUCUAGC-------UCUGCGaCGAGc -5'
18664 5' -53.1 NC_004682.1 + 14950 0.69 0.652877
Target:  5'- aCCAGG-CguGGUCGAGGCGUUcgcgccguaguacaGCUCa -3'
miRNA:   3'- -GGUCUuGguCUAGCUCUGCGA--------------CGAGc -5'
18664 5' -53.1 NC_004682.1 + 24090 0.69 0.67839
Target:  5'- aCCGGAcgaugaacgACCGGccCGAG-UGCUGCUCu -3'
miRNA:   3'- -GGUCU---------UGGUCuaGCUCuGCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 13403 0.67 0.764362
Target:  5'- cCCAGuggauucGCCAG-UCGuGGACGCaguggUGCUCGc -3'
miRNA:   3'- -GGUCu------UGGUCuAGC-UCUGCG-----ACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 26286 0.69 0.645086
Target:  5'- aCCGGAcguACCGcugcGGUCG-GACGCcGCUCa -3'
miRNA:   3'- -GGUCU---UGGU----CUAGCuCUGCGaCGAGc -5'
18664 5' -53.1 NC_004682.1 + 17090 0.67 0.753977
Target:  5'- --cGAACUGGGgcUUGAGGCcCUGCUCGa -3'
miRNA:   3'- gguCUUGGUCU--AGCUCUGcGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 43214 0.68 0.689416
Target:  5'- gCCuGGACCGGAgCGuGGCGgCUGC-CGa -3'
miRNA:   3'- -GGuCUUGGUCUaGCuCUGC-GACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 13078 0.7 0.616123
Target:  5'- uCCGGGucggugaccuuggugGCCAGGUcCGGGAUGCgccGCUUGa -3'
miRNA:   3'- -GGUCU---------------UGGUCUA-GCUCUGCGa--CGAGC- -5'
18664 5' -53.1 NC_004682.1 + 3653 0.76 0.289563
Target:  5'- uCCAGGccacgguaggcacguACCGGAUCGAGAUGCggagGUUCu -3'
miRNA:   3'- -GGUCU---------------UGGUCUAGCUCUGCGa---CGAGc -5'
18664 5' -53.1 NC_004682.1 + 12353 0.67 0.743466
Target:  5'- cCCAGGAUgcggcccucaCGGAUCGcgccGAC-CUGCUCGg -3'
miRNA:   3'- -GGUCUUG----------GUCUAGCu---CUGcGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 40948 0.68 0.722109
Target:  5'- gCCcGGACCAcGAUCGGaACGC-GCUCa -3'
miRNA:   3'- -GGuCUUGGU-CUAGCUcUGCGaCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.