miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18664 5' -53.1 NC_004682.1 + 39761 0.66 0.841465
Target:  5'- -gGGGGCCGGAU---GACGCUGC-CGc -3'
miRNA:   3'- ggUCUUGGUCUAgcuCUGCGACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 24640 0.69 0.656214
Target:  5'- uCCGGuGCCAGGaugUCGAGGCG-UGC-CGg -3'
miRNA:   3'- -GGUCuUGGUCU---AGCUCUGCgACGaGC- -5'
18664 5' -53.1 NC_004682.1 + 32914 0.71 0.52401
Target:  5'- aCCgAGAACgaCAGGUgcCGGGACGCUccaGCUCGg -3'
miRNA:   3'- -GG-UCUUG--GUCUA--GCUCUGCGA---CGAGC- -5'
18664 5' -53.1 NC_004682.1 + 11135 0.71 0.52401
Target:  5'- gCCAgGAGCCgaAGGUCGAGACGUUcaGC-CGg -3'
miRNA:   3'- -GGU-CUUGG--UCUAGCUCUGCGA--CGaGC- -5'
18664 5' -53.1 NC_004682.1 + 7465 0.72 0.502781
Target:  5'- gCCAGGACCAGA-CGAaGAacacguucuCGCUGUUCc -3'
miRNA:   3'- -GGUCUUGGUCUaGCU-CU---------GCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 20028 0.72 0.480903
Target:  5'- aUCGGGGCCGGcaaccugacgguAUCGGGuggcccaACGCUGCUCa -3'
miRNA:   3'- -GGUCUUGGUC------------UAGCUC-------UGCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 17719 0.69 0.667319
Target:  5'- uCCAGccgaugauccccGGCCuGGUCGAGAacuuCGCUcaGCUCGg -3'
miRNA:   3'- -GGUC------------UUGGuCUAGCUCU----GCGA--CGAGC- -5'
18664 5' -53.1 NC_004682.1 + 9538 0.69 0.682806
Target:  5'- -aGGAGCUGGGcgUCGAccccgagaccggccaGACGCUGUUCGa -3'
miRNA:   3'- ggUCUUGGUCU--AGCU---------------CUGCGACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 10404 0.68 0.689416
Target:  5'- cCCGGAGCUGGAccccaaCGAGAgGUUGCUg- -3'
miRNA:   3'- -GGUCUUGGUCUa-----GCUCUgCGACGAgc -5'
18664 5' -53.1 NC_004682.1 + 36509 0.67 0.753977
Target:  5'- uCCAGAGCCgcacggAGGUCGAGGacCGCcGCgUUGa -3'
miRNA:   3'- -GGUCUUGG------UCUAGCUCU--GCGaCG-AGC- -5'
18664 5' -53.1 NC_004682.1 + 36331 0.67 0.774606
Target:  5'- gCCAGGGCCGucGUCGcggguGACG-UGCUCGa -3'
miRNA:   3'- -GGUCUUGGUc-UAGCu----CUGCgACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 21949 0.67 0.79167
Target:  5'- aCCAGGgccacacggcccacACCAucaagguGUCG-GACGCUGCUCc -3'
miRNA:   3'- -GGUCU--------------UGGUc------UAGCuCUGCGACGAGc -5'
18664 5' -53.1 NC_004682.1 + 6343 0.66 0.813962
Target:  5'- uCCGGGACUccccgccgacacGGcgCG-GGCGgUGCUCGa -3'
miRNA:   3'- -GGUCUUGG------------UCuaGCuCUGCgACGAGC- -5'
18664 5' -53.1 NC_004682.1 + 5771 1.12 0.000976
Target:  5'- aCCAGAACCAGAUCGAGACGCUGCUCGg -3'
miRNA:   3'- -GGUCUUGGUCUAGCUCUGCGACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.