miRNA: 3'- -GGUGaCCGACa--ACuCAUGCaGcUCGC- -5'
miRNA: 3'- -GGUGa--CCGacaACU-CAUGCAGCUCGc -5'
miRNA: 3'- gGUGaCCGa--CA---AC---UCAUGCAGCUCGC- -5'
miRNA: 3'- -GGUGACCGA------CAa---CUCa---UGCAGCUCGC- -5'
miRNA: 3'- -GGUGACCGACAACUCAUGCAGCUCGC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18665 | 5' | -52.7 | NC_004682.1 | + | 25578 | 0.66 | 0.835746 |
|
Target: 5'- gCCACcGGCUGaggUGuGUGCG-CuGGCGg -3' miRNA: 3'- -GGUGaCCGACa--ACuCAUGCaGcUCGC- -5' |
|||||||
| 18665 | 5' | -52.7 | NC_004682.1 | + | 48835 | 0.67 | 0.767845 |
|
Target: 5'- uUCGCccaGGCgg-UGAcGUACGUCGGGCu -3' miRNA: 3'- -GGUGa--CCGacaACU-CAUGCAGCUCGc -5' |
|||||||
| 18665 | 5' | -52.7 | NC_004682.1 | + | 40240 | 0.68 | 0.746976 |
|
Target: 5'- aCAC-GGCcugGUcaaUGcccAGUGCGUCGAGCGc -3' miRNA: 3'- gGUGaCCGa--CA---AC---UCAUGCAGCUCGC- -5' |
|||||||
| 18665 | 5' | -52.7 | NC_004682.1 | + | 41047 | 0.77 | 0.253181 |
|
Target: 5'- gCCGCUGGCUcgcaacGUgucgGAGcacaACGUCGAGCGa -3' miRNA: 3'- -GGUGACCGA------CAa---CUCa---UGCAGCUCGC- -5' |
|||||||
| 18665 | 5' | -52.7 | NC_004682.1 | + | 5865 | 1.1 | 0.001523 |
|
Target: 5'- gCCACUGGCUGUUGAGUACGUCGAGCGc -3' miRNA: 3'- -GGUGACCGACAACUCAUGCAGCUCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home