miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18667 3' -52.7 NC_004682.1 + 48094 0.66 0.846799
Target:  5'- uCAGGC-CGgugacgGCGaGCAUCaCUCGGUcGACu -3'
miRNA:   3'- -GUCUGaGCa-----UGC-CGUAG-GAGCUA-CUG- -5'
18667 3' -52.7 NC_004682.1 + 5320 0.66 0.837883
Target:  5'- uCGGACUCGU--GGCcgGUCUgggCGAUGAa -3'
miRNA:   3'- -GUCUGAGCAugCCG--UAGGa--GCUACUg -5'
18667 3' -52.7 NC_004682.1 + 34852 0.66 0.837883
Target:  5'- gCAGACgaccUCGUugGGC-UCCcCGAcguugGACa -3'
miRNA:   3'- -GUCUG----AGCAugCCGuAGGaGCUa----CUG- -5'
18667 3' -52.7 NC_004682.1 + 25007 0.66 0.837883
Target:  5'- -cGACUCG-GCGGCAUCUgcUCGcauccagGGCg -3'
miRNA:   3'- guCUGAGCaUGCCGUAGG--AGCua-----CUG- -5'
18667 3' -52.7 NC_004682.1 + 7983 0.66 0.806908
Target:  5'- gGGACUCGUACuGGCugccggucgacgagAUCCU-GAUGuCg -3'
miRNA:   3'- gUCUGAGCAUG-CCG--------------UAGGAgCUACuG- -5'
18667 3' -52.7 NC_004682.1 + 4448 0.66 0.800056
Target:  5'- --cGCcCGUGgCGGCggCUUCGGUGACg -3'
miRNA:   3'- gucUGaGCAU-GCCGuaGGAGCUACUG- -5'
18667 3' -52.7 NC_004682.1 + 40585 0.66 0.800056
Target:  5'- uGGAggCGUACGgaugaaguugaaGCAcaagacaaucgUCCUCGAUGACg -3'
miRNA:   3'- gUCUgaGCAUGC------------CGU-----------AGGAGCUACUG- -5'
18667 3' -52.7 NC_004682.1 + 30795 0.67 0.769717
Target:  5'- -uGGCUgGUGCGGCGgugcuUCCUgGccGACg -3'
miRNA:   3'- guCUGAgCAUGCCGU-----AGGAgCuaCUG- -5'
18667 3' -52.7 NC_004682.1 + 42303 0.68 0.716348
Target:  5'- -cGACUCaUGCGGaccuUCCUCGGUG-Cg -3'
miRNA:   3'- guCUGAGcAUGCCgu--AGGAGCUACuG- -5'
18667 3' -52.7 NC_004682.1 + 21667 0.68 0.716348
Target:  5'- --aACUCGgcgAUGGCGUCcCUCGGUG-Ca -3'
miRNA:   3'- gucUGAGCa--UGCCGUAG-GAGCUACuG- -5'
18667 3' -52.7 NC_004682.1 + 19810 0.68 0.705364
Target:  5'- cCGGGgaUGUACGGCucagcgggcUCCUCGGUGGa -3'
miRNA:   3'- -GUCUgaGCAUGCCGu--------AGGAGCUACUg -5'
18667 3' -52.7 NC_004682.1 + 19084 0.69 0.683182
Target:  5'- uGGcCUUGUACGGCcucGUCCaUCGAgccGACg -3'
miRNA:   3'- gUCuGAGCAUGCCG---UAGG-AGCUa--CUG- -5'
18667 3' -52.7 NC_004682.1 + 35388 0.69 0.672009
Target:  5'- cCAGccCUC--GCGGgaGUCCUCGAUGACg -3'
miRNA:   3'- -GUCu-GAGcaUGCCg-UAGGAGCUACUG- -5'
18667 3' -52.7 NC_004682.1 + 37506 0.69 0.672009
Target:  5'- aAGGCcCGUuCGGCAUCCaCGAaGGCa -3'
miRNA:   3'- gUCUGaGCAuGCCGUAGGaGCUaCUG- -5'
18667 3' -52.7 NC_004682.1 + 16578 0.71 0.516232
Target:  5'- cCAGGCUCG-AUGGaaGUCCUgGAUGAUg -3'
miRNA:   3'- -GUCUGAGCaUGCCg-UAGGAgCUACUG- -5'
18667 3' -52.7 NC_004682.1 + 5357 0.73 0.453537
Target:  5'- gGGAC-CGUugGcGUAcUCCUCGGUGGCc -3'
miRNA:   3'- gUCUGaGCAugC-CGU-AGGAGCUACUG- -5'
18667 3' -52.7 NC_004682.1 + 23548 0.76 0.307874
Target:  5'- cCGGaaGCUCGaacaucucccggACGGCGUCCUCGGUGAa -3'
miRNA:   3'- -GUC--UGAGCa-----------UGCCGUAGGAGCUACUg -5'
18667 3' -52.7 NC_004682.1 + 6683 1.09 0.001742
Target:  5'- cCAGACUCGUACGGCAUCCUCGAUGACc -3'
miRNA:   3'- -GUCUGAGCAUGCCGUAGGAGCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.