miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18669 5' -56.7 NC_004682.1 + 27242 0.66 0.631223
Target:  5'- -aGUGGGUCGCCGagcaggGCCacacgGUCGUCGGg -3'
miRNA:   3'- cgCACCUAGUGGUag----CGG-----CGGCAGUC- -5'
18669 5' -56.7 NC_004682.1 + 5471 0.66 0.631223
Target:  5'- gGgGUcGGUCACCAg-GCCGCgGUCGa -3'
miRNA:   3'- -CgCAcCUAGUGGUagCGGCGgCAGUc -5'
18669 5' -56.7 NC_004682.1 + 2082 0.66 0.624693
Target:  5'- ---cGGGUgCGCCGUCGgccucggggggccaaCCGCCGUCGu -3'
miRNA:   3'- cgcaCCUA-GUGGUAGC---------------GGCGGCAGUc -5'
18669 5' -56.7 NC_004682.1 + 43858 0.66 0.609467
Target:  5'- --uUGGAUCACCGUCGaguucCCGCCuG-CGGu -3'
miRNA:   3'- cgcACCUAGUGGUAGC-----GGCGG-CaGUC- -5'
18669 5' -56.7 NC_004682.1 + 4358 0.67 0.587787
Target:  5'- gGCGcUGGugaccgccGUCACCGaaGCCGCCGcCAc -3'
miRNA:   3'- -CGC-ACC--------UAGUGGUagCGGCGGCaGUc -5'
18669 5' -56.7 NC_004682.1 + 24638 0.67 0.555559
Target:  5'- cGCGgGGA-CGuuGUUGCCGCCGUUc- -3'
miRNA:   3'- -CGCaCCUaGUggUAGCGGCGGCAGuc -5'
18669 5' -56.7 NC_004682.1 + 33476 0.68 0.53436
Target:  5'- ---cGGcugcCGCCGUUGCCGCCGcCAGc -3'
miRNA:   3'- cgcaCCua--GUGGUAGCGGCGGCaGUC- -5'
18669 5' -56.7 NC_004682.1 + 35148 0.68 0.513453
Target:  5'- gGCGUGGucgAUCuCCAUCGCCGCg----- -3'
miRNA:   3'- -CGCACC---UAGuGGUAGCGGCGgcaguc -5'
18669 5' -56.7 NC_004682.1 + 43723 0.68 0.503125
Target:  5'- gGCGUucGaGAUCGCUcgCGCCGUCGUa-- -3'
miRNA:   3'- -CGCA--C-CUAGUGGuaGCGGCGGCAguc -5'
18669 5' -56.7 NC_004682.1 + 16670 0.68 0.496972
Target:  5'- cGCGUcucGGAUCGCCAucaUCcaggacuuccaucgaGCCugguugGCCGUCAGg -3'
miRNA:   3'- -CGCA---CCUAGUGGU---AG---------------CGG------CGGCAGUC- -5'
18669 5' -56.7 NC_004682.1 + 20017 0.68 0.486794
Target:  5'- cGCuGUGGuGUCGCCcuugaacuucaggacGaacgUGCCGCCGUCGGa -3'
miRNA:   3'- -CG-CACC-UAGUGG---------------Ua---GCGGCGGCAGUC- -5'
18669 5' -56.7 NC_004682.1 + 3323 0.7 0.405643
Target:  5'- cGgGUGGGUUGCCugCGCCGCCGa--- -3'
miRNA:   3'- -CgCACCUAGUGGuaGCGGCGGCaguc -5'
18669 5' -56.7 NC_004682.1 + 5900 0.7 0.387606
Target:  5'- gGCGcGGGUCACCgcGUCGUuccagauguUGCCGUCGa -3'
miRNA:   3'- -CGCaCCUAGUGG--UAGCG---------GCGGCAGUc -5'
18669 5' -56.7 NC_004682.1 + 17775 0.7 0.387606
Target:  5'- gGC-UGGAUCugCugcagCGCCGUgGUCAGc -3'
miRNA:   3'- -CGcACCUAGugGua---GCGGCGgCAGUC- -5'
18669 5' -56.7 NC_004682.1 + 3511 0.7 0.378787
Target:  5'- gGUGUccGGAUCGCCGggGCCGUCGaaccUCAGu -3'
miRNA:   3'- -CGCA--CCUAGUGGUagCGGCGGC----AGUC- -5'
18669 5' -56.7 NC_004682.1 + 41396 0.7 0.378787
Target:  5'- aGCG-GGAUCGCCuuGUCGgCGUCGUUg- -3'
miRNA:   3'- -CGCaCCUAGUGG--UAGCgGCGGCAGuc -5'
18669 5' -56.7 NC_004682.1 + 40667 0.71 0.344883
Target:  5'- uGCaUGGcUCggGCCAUCGCCGCCGgCAu -3'
miRNA:   3'- -CGcACCuAG--UGGUAGCGGCGGCaGUc -5'
18669 5' -56.7 NC_004682.1 + 4714 0.72 0.313214
Target:  5'- gGUGcUGGAUCGCCGUgUGCCGCaggcgcgcuacaCGUCGGu -3'
miRNA:   3'- -CGC-ACCUAGUGGUA-GCGGCG------------GCAGUC- -5'
18669 5' -56.7 NC_004682.1 + 22866 0.73 0.269928
Target:  5'- uGCGcGGuggCAUCAUgGCCGUCGUCGGc -3'
miRNA:   3'- -CGCaCCua-GUGGUAgCGGCGGCAGUC- -5'
18669 5' -56.7 NC_004682.1 + 39883 0.74 0.231593
Target:  5'- cCGUGGAUCACCGcCGuCUGCaCGUCGa -3'
miRNA:   3'- cGCACCUAGUGGUaGC-GGCG-GCAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.