miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18672 5' -54.8 NC_004682.1 + 7970 0.66 0.727534
Target:  5'- -cGAGAUcgCCCGAGGGacucgUACUGGCUGc -3'
miRNA:   3'- ccUUCUA--GGGCUCCCg----AUGGUCGAUc -5'
18672 5' -54.8 NC_004682.1 + 47685 0.66 0.727534
Target:  5'- aGGcAAGGUCuCCGAGgccGGUcGCCAGCg-- -3'
miRNA:   3'- -CC-UUCUAG-GGCUC---CCGaUGGUCGauc -5'
18672 5' -54.8 NC_004682.1 + 47024 0.66 0.71678
Target:  5'- cGGAGGAUgUCGuGGGCacGCCGGaagAGg -3'
miRNA:   3'- -CCUUCUAgGGCuCCCGa-UGGUCga-UC- -5'
18672 5' -54.8 NC_004682.1 + 2449 0.66 0.71678
Target:  5'- -cAAGGUCCCaAGGGUgaUACCGGUg-- -3'
miRNA:   3'- ccUUCUAGGGcUCCCG--AUGGUCGauc -5'
18672 5' -54.8 NC_004682.1 + 14571 0.66 0.705941
Target:  5'- -cAGGAUCUCGGuGGGCgaACCccgAGCUGGa -3'
miRNA:   3'- ccUUCUAGGGCU-CCCGa-UGG---UCGAUC- -5'
18672 5' -54.8 NC_004682.1 + 25820 0.66 0.684053
Target:  5'- gGGGAGAUcCCCGAaGGCgaGCC-GCUAc -3'
miRNA:   3'- -CCUUCUA-GGGCUcCCGa-UGGuCGAUc -5'
18672 5' -54.8 NC_004682.1 + 6466 0.67 0.673027
Target:  5'- cGggGuaguUgCCGAuGGGCUGCCAGgUGu -3'
miRNA:   3'- cCuuCu---AgGGCU-CCCGAUGGUCgAUc -5'
18672 5' -54.8 NC_004682.1 + 2107 0.67 0.661962
Target:  5'- -cAAGGUCCgCGAGGGUUcaccggagaaGCCGGCc-- -3'
miRNA:   3'- ccUUCUAGG-GCUCCCGA----------UGGUCGauc -5'
18672 5' -54.8 NC_004682.1 + 35459 0.68 0.595343
Target:  5'- cGAGGAcUCCCgcGAGGGCUgGgCGGCUGc -3'
miRNA:   3'- cCUUCU-AGGG--CUCCCGA-UgGUCGAUc -5'
18672 5' -54.8 NC_004682.1 + 27870 0.68 0.562332
Target:  5'- cGAAGGccagCCCgGAGGGCUuCC-GCUAGu -3'
miRNA:   3'- cCUUCUa---GGG-CUCCCGAuGGuCGAUC- -5'
18672 5' -54.8 NC_004682.1 + 43491 0.69 0.540597
Target:  5'- uGGAAGucGUCaCCGGGGGUguUGCCGGUc-- -3'
miRNA:   3'- -CCUUC--UAG-GGCUCCCG--AUGGUCGauc -5'
18672 5' -54.8 NC_004682.1 + 35609 0.69 0.529834
Target:  5'- cGAAGuggUCCGAGGGCUucucgguCCAGCccgAGa -3'
miRNA:   3'- cCUUCua-GGGCUCCCGAu------GGUCGa--UC- -5'
18672 5' -54.8 NC_004682.1 + 13086 0.69 0.529834
Target:  5'- ------cCCCGAGGGCUACCuGUcGGa -3'
miRNA:   3'- ccuucuaGGGCUCCCGAUGGuCGaUC- -5'
18672 5' -54.8 NC_004682.1 + 11753 0.71 0.417961
Target:  5'- -cAAGGUCCCGAuGGGUccgACCGGCa-- -3'
miRNA:   3'- ccUUCUAGGGCU-CCCGa--UGGUCGauc -5'
18672 5' -54.8 NC_004682.1 + 13180 0.72 0.390004
Target:  5'- uGGGAGAUCCU--GGGCUACC-GCa-- -3'
miRNA:   3'- -CCUUCUAGGGcuCCCGAUGGuCGauc -5'
18672 5' -54.8 NC_004682.1 + 29067 0.72 0.390004
Target:  5'- aGGggGAggaCUGGGGGCUgcugACCAGCc-- -3'
miRNA:   3'- -CCuuCUag-GGCUCCCGA----UGGUCGauc -5'
18672 5' -54.8 NC_004682.1 + 33229 0.73 0.33789
Target:  5'- cGAAGAUCCCuacuGGGCcggcACCGGCUAc -3'
miRNA:   3'- cCUUCUAGGGcu--CCCGa---UGGUCGAUc -5'
18672 5' -54.8 NC_004682.1 + 7918 1.12 0.00066
Target:  5'- gGGAAGAUCCCGAGGGCUACCAGCUAGg -3'
miRNA:   3'- -CCUUCUAGGGCUCCCGAUGGUCGAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.