miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18673 5' -48.7 NC_004682.1 + 34312 0.66 0.960828
Target:  5'- cGACG-CAGGAcaccCUCG-UCGCCGAGg- -3'
miRNA:   3'- -CUGUaGUUCUu---GAGCuAGUGGCUCag -5'
18673 5' -48.7 NC_004682.1 + 3079 0.66 0.952237
Target:  5'- uGACcaCGGGAugUCGA-CGCCGcGUCg -3'
miRNA:   3'- -CUGuaGUUCUugAGCUaGUGGCuCAG- -5'
18673 5' -48.7 NC_004682.1 + 11302 0.67 0.947501
Target:  5'- cGCAUCucGGAACUCGAa-ACCGAccuGUCc -3'
miRNA:   3'- cUGUAGu-UCUUGAGCUagUGGCU---CAG- -5'
18673 5' -48.7 NC_004682.1 + 35051 0.67 0.947501
Target:  5'- uGAuCcgCAGGAACUCGuagacCugCGGGUCc -3'
miRNA:   3'- -CU-GuaGUUCUUGAGCua---GugGCUCAG- -5'
18673 5' -48.7 NC_004682.1 + 16132 0.67 0.947501
Target:  5'- aGACAgcUCAAGAcccaGCUCGAagcCAUCGAGa- -3'
miRNA:   3'- -CUGU--AGUUCU----UGAGCUa--GUGGCUCag -5'
18673 5' -48.7 NC_004682.1 + 9027 0.67 0.947501
Target:  5'- uGGCAggcCAAcGAcCUCGA-CAUCGAGUCg -3'
miRNA:   3'- -CUGUa--GUU-CUuGAGCUaGUGGCUCAG- -5'
18673 5' -48.7 NC_004682.1 + 13799 0.67 0.937125
Target:  5'- uGGCGUCAAGGACgCcGUCuauGCCGAGg- -3'
miRNA:   3'- -CUGUAGUUCUUGaGcUAG---UGGCUCag -5'
18673 5' -48.7 NC_004682.1 + 34703 0.67 0.937125
Target:  5'- cGCAUCAGGAAC-CGAgUCACC-AGcCg -3'
miRNA:   3'- cUGUAGUUCUUGaGCU-AGUGGcUCaG- -5'
18673 5' -48.7 NC_004682.1 + 9419 0.67 0.931478
Target:  5'- gGAgAUCAccccGGAgcuucGCUCGGUCACCGAc-- -3'
miRNA:   3'- -CUgUAGU----UCU-----UGAGCUAGUGGCUcag -5'
18673 5' -48.7 NC_004682.1 + 37626 0.67 0.925524
Target:  5'- --gAUCAGGGACUUGAccgccCGCCG-GUCg -3'
miRNA:   3'- cugUAGUUCUUGAGCUa----GUGGCuCAG- -5'
18673 5' -48.7 NC_004682.1 + 1538 0.67 0.925524
Target:  5'- cGACAUCGucGGGGCcguggccaCGAUCAaggUCGAGUCg -3'
miRNA:   3'- -CUGUAGU--UCUUGa-------GCUAGU---GGCUCAG- -5'
18673 5' -48.7 NC_004682.1 + 1097 0.68 0.898641
Target:  5'- cGACGUUGAGcuGACUCGGUCagagACCGAuacagGUCu -3'
miRNA:   3'- -CUGUAGUUC--UUGAGCUAG----UGGCU-----CAG- -5'
18673 5' -48.7 NC_004682.1 + 24707 0.69 0.875343
Target:  5'- cGACAUCcuggcaccGGAGCcCGuggcguUCGCCGGGUCg -3'
miRNA:   3'- -CUGUAGu-------UCUUGaGCu-----AGUGGCUCAG- -5'
18673 5' -48.7 NC_004682.1 + 42731 0.69 0.8584
Target:  5'- aGCGUCGGGAACgggguucgCGAcgGCUGGGUCa -3'
miRNA:   3'- cUGUAGUUCUUGa-------GCUagUGGCUCAG- -5'
18673 5' -48.7 NC_004682.1 + 8073 0.7 0.815566
Target:  5'- cGACAUCAGGAuCUCG-UCGaccggcagccaguaCGAGUCg -3'
miRNA:   3'- -CUGUAGUUCUuGAGCuAGUg-------------GCUCAG- -5'
18673 5' -48.7 NC_004682.1 + 8584 0.7 0.811611
Target:  5'- aGACcUCuu--GCUCGAUCACCGcGUCc -3'
miRNA:   3'- -CUGuAGuucuUGAGCUAGUGGCuCAG- -5'
18673 5' -48.7 NC_004682.1 + 19470 0.7 0.811611
Target:  5'- cGACccccgCAAGGGCaaGAUcCACCGGGUCg -3'
miRNA:   3'- -CUGua---GUUCUUGagCUA-GUGGCUCAG- -5'
18673 5' -48.7 NC_004682.1 + 17910 0.71 0.791347
Target:  5'- aACAUCGGcgcGAGCUUGAUgACCGAGcCc -3'
miRNA:   3'- cUGUAGUU---CUUGAGCUAgUGGCUCaG- -5'
18673 5' -48.7 NC_004682.1 + 7943 0.71 0.780932
Target:  5'- aGGCAUCAAGaAGCUcCGAgagggCAUCGAGaUCg -3'
miRNA:   3'- -CUGUAGUUC-UUGA-GCUa----GUGGCUC-AG- -5'
18673 5' -48.7 NC_004682.1 + 48208 0.71 0.769276
Target:  5'- uGACAugagcuuUCAGGAAUg-GAUgCGCCGAGUCg -3'
miRNA:   3'- -CUGU-------AGUUCUUGagCUA-GUGGCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.