Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18673 | 5' | -48.7 | NC_004682.1 | + | 8029 | 1.11 | 0.00311 |
Target: 5'- gGACAUCAAGAACUCGAUCACCGAGUCa -3' miRNA: 3'- -CUGUAGUUCUUGAGCUAGUGGCUCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 49221 | 0.74 | 0.631257 |
Target: 5'- cACGUCAAGGugUCGAagucuggcaaggcuUCACCGGG-Ca -3' miRNA: 3'- cUGUAGUUCUugAGCU--------------AGUGGCUCaG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 26526 | 0.73 | 0.69254 |
Target: 5'- aGAUGUCAGcGACUCGAUgACCGuGUUg -3' miRNA: 3'- -CUGUAGUUcUUGAGCUAgUGGCuCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 10007 | 0.72 | 0.715294 |
Target: 5'- cGCAUCGacauGGGcuACUCGAUCACCGAa-- -3' miRNA: 3'- cUGUAGU----UCU--UGAGCUAGUGGCUcag -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 48208 | 0.71 | 0.769276 |
Target: 5'- uGACAugagcuuUCAGGAAUg-GAUgCGCCGAGUCg -3' miRNA: 3'- -CUGU-------AGUUCUUGagCUA-GUGGCUCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 7943 | 0.71 | 0.780932 |
Target: 5'- aGGCAUCAAGaAGCUcCGAgagggCAUCGAGaUCg -3' miRNA: 3'- -CUGUAGUUC-UUGA-GCUa----GUGGCUC-AG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 17910 | 0.71 | 0.791347 |
Target: 5'- aACAUCGGcgcGAGCUUGAUgACCGAGcCc -3' miRNA: 3'- cUGUAGUU---CUUGAGCUAgUGGCUCaG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 8584 | 0.7 | 0.811611 |
Target: 5'- aGACcUCuu--GCUCGAUCACCGcGUCc -3' miRNA: 3'- -CUGuAGuucuUGAGCUAGUGGCuCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 19470 | 0.7 | 0.811611 |
Target: 5'- cGACccccgCAAGGGCaaGAUcCACCGGGUCg -3' miRNA: 3'- -CUGua---GUUCUUGagCUA-GUGGCUCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 8073 | 0.7 | 0.815566 |
Target: 5'- cGACAUCAGGAuCUCG-UCGaccggcagccaguaCGAGUCg -3' miRNA: 3'- -CUGUAGUUCUuGAGCuAGUg-------------GCUCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 42731 | 0.69 | 0.8584 |
Target: 5'- aGCGUCGGGAACgggguucgCGAcgGCUGGGUCa -3' miRNA: 3'- cUGUAGUUCUUGa-------GCUagUGGCUCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 24707 | 0.69 | 0.875343 |
Target: 5'- cGACAUCcuggcaccGGAGCcCGuggcguUCGCCGGGUCg -3' miRNA: 3'- -CUGUAGu-------UCUUGaGCu-----AGUGGCUCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 1097 | 0.68 | 0.898641 |
Target: 5'- cGACGUUGAGcuGACUCGGUCagagACCGAuacagGUCu -3' miRNA: 3'- -CUGUAGUUC--UUGAGCUAG----UGGCU-----CAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 1538 | 0.67 | 0.925524 |
Target: 5'- cGACAUCGucGGGGCcguggccaCGAUCAaggUCGAGUCg -3' miRNA: 3'- -CUGUAGU--UCUUGa-------GCUAGU---GGCUCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 37626 | 0.67 | 0.925524 |
Target: 5'- --gAUCAGGGACUUGAccgccCGCCG-GUCg -3' miRNA: 3'- cugUAGUUCUUGAGCUa----GUGGCuCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 9419 | 0.67 | 0.931478 |
Target: 5'- gGAgAUCAccccGGAgcuucGCUCGGUCACCGAc-- -3' miRNA: 3'- -CUgUAGU----UCU-----UGAGCUAGUGGCUcag -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 34703 | 0.67 | 0.937125 |
Target: 5'- cGCAUCAGGAAC-CGAgUCACC-AGcCg -3' miRNA: 3'- cUGUAGUUCUUGaGCU-AGUGGcUCaG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 13799 | 0.67 | 0.937125 |
Target: 5'- uGGCGUCAAGGACgCcGUCuauGCCGAGg- -3' miRNA: 3'- -CUGUAGUUCUUGaGcUAG---UGGCUCag -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 35051 | 0.67 | 0.947501 |
Target: 5'- uGAuCcgCAGGAACUCGuagacCugCGGGUCc -3' miRNA: 3'- -CU-GuaGUUCUUGAGCua---GugGCUCAG- -5' |
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18673 | 5' | -48.7 | NC_004682.1 | + | 16132 | 0.67 | 0.947501 |
Target: 5'- aGACAgcUCAAGAcccaGCUCGAagcCAUCGAGa- -3' miRNA: 3'- -CUGU--AGUUCU----UGAGCUa--GUGGCUCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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