miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18674 3' -60.3 NC_004682.1 + 41760 0.66 0.48456
Target:  5'- uGAGGGCGaccugggGGACGCUGaggaCGaguUCCGCg -3'
miRNA:   3'- gCUCCUGCa------CCUGCGGUg---GC---AGGCGa -5'
18674 3' -60.3 NC_004682.1 + 39304 0.66 0.465079
Target:  5'- uCGuGGuCGUGGucgACGCUgaGCCGcuUCCGCUu -3'
miRNA:   3'- -GCuCCuGCACC---UGCGG--UGGC--AGGCGA- -5'
18674 3' -60.3 NC_004682.1 + 20980 0.68 0.366025
Target:  5'- aCGAGucUGUGGACGCUcCCGgacaacCCGCUc -3'
miRNA:   3'- -GCUCcuGCACCUGCGGuGGCa-----GGCGA- -5'
18674 3' -60.3 NC_004682.1 + 8627 0.68 0.357769
Target:  5'- -aAGGACaGcGGcaagaagauugACGCCGCCGUCUGCg -3'
miRNA:   3'- gcUCCUG-CaCC-----------UGCGGUGGCAGGCGa -5'
18674 3' -60.3 NC_004682.1 + 49946 0.69 0.31847
Target:  5'- -uGGGGCGUGcGAUGCCugugGCCGUCC-Cg -3'
miRNA:   3'- gcUCCUGCAC-CUGCGG----UGGCAGGcGa -5'
18674 3' -60.3 NC_004682.1 + 34439 0.7 0.25611
Target:  5'- gCGAuGGucccCGUGGGUGCCACCGUCCuCUu -3'
miRNA:   3'- -GCU-CCu---GCACCUGCGGUGGCAGGcGA- -5'
18674 3' -60.3 NC_004682.1 + 32318 0.7 0.247977
Target:  5'- uCGAGGACGUGGuucgggagaACGCCgagcugaagcgaaaGCUGgCCGCg -3'
miRNA:   3'- -GCUCCUGCACC---------UGCGG--------------UGGCaGGCGa -5'
18674 3' -60.3 NC_004682.1 + 2679 0.7 0.243687
Target:  5'- uCGAGGACG-GGACGCCuGCUGgaccCUGUg -3'
miRNA:   3'- -GCUCCUGCaCCUGCGG-UGGCa---GGCGa -5'
18674 3' -60.3 NC_004682.1 + 39879 0.71 0.237666
Target:  5'- -cAGGcCGUGGAUcaCCGCCGUCUGCa -3'
miRNA:   3'- gcUCCuGCACCUGc-GGUGGCAGGCGa -5'
18674 3' -60.3 NC_004682.1 + 15046 0.71 0.214817
Target:  5'- uGuGGGCGUGGAagccgacacgcuCGUCACCGUCCa-- -3'
miRNA:   3'- gCuCCUGCACCU------------GCGGUGGCAGGcga -5'
18674 3' -60.3 NC_004682.1 + 24637 0.72 0.193879
Target:  5'- gCGGGGACGUuGuuGCCGCCGUUCGaCg -3'
miRNA:   3'- -GCUCCUGCAcCugCGGUGGCAGGC-Ga -5'
18674 3' -60.3 NC_004682.1 + 3573 0.72 0.188931
Target:  5'- aCGAGGaagGCG-GGGgGuUCACCGUCCGCUc -3'
miRNA:   3'- -GCUCC---UGCaCCUgC-GGUGGCAGGCGA- -5'
18674 3' -60.3 NC_004682.1 + 8298 1.07 0.000524
Target:  5'- gCGAGGACGUGGACGCCACCGUCCGCUc -3'
miRNA:   3'- -GCUCCUGCACCUGCGGUGGCAGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.