miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18674 5' -50.9 NC_004682.1 + 12257 0.66 0.933392
Target:  5'- aUCGGCUcggUGACGUUGUCcaGCAgggugCCGg -3'
miRNA:   3'- -GGUCGAu--GCUGCAACAG--CGUaa---GGCg -5'
18674 5' -50.9 NC_004682.1 + 10168 0.66 0.931722
Target:  5'- cCCGGCUGaggaggcugcugcgUGACGUUGgaagaGUAcgCCGCc -3'
miRNA:   3'- -GGUCGAU--------------GCUGCAACag---CGUaaGGCG- -5'
18674 5' -50.9 NC_004682.1 + 33515 0.66 0.921765
Target:  5'- gCCAGCUucGCGaACGccUGgccCGCGUUCUGg -3'
miRNA:   3'- -GGUCGA--UGC-UGCa-ACa--GCGUAAGGCg -5'
18674 5' -50.9 NC_004682.1 + 35421 0.66 0.915517
Target:  5'- aCCGGCccaGuCGggGUCGUAcUCCGUc -3'
miRNA:   3'- -GGUCGaugCuGCaaCAGCGUaAGGCG- -5'
18674 5' -50.9 NC_004682.1 + 32100 0.66 0.908981
Target:  5'- aCGGUUGCGGgGUUcacGUCGaaugacUCCGCg -3'
miRNA:   3'- gGUCGAUGCUgCAA---CAGCgua---AGGCG- -5'
18674 5' -50.9 NC_004682.1 + 7045 0.67 0.895056
Target:  5'- aUAGCUGgucCGAUGUUGUaGCcgUgCGCg -3'
miRNA:   3'- gGUCGAU---GCUGCAACAgCGuaAgGCG- -5'
18674 5' -50.9 NC_004682.1 + 25048 0.67 0.887674
Target:  5'- cCCGGCuUGC-ACGUaGUCGC---CCGCg -3'
miRNA:   3'- -GGUCG-AUGcUGCAaCAGCGuaaGGCG- -5'
18674 5' -50.9 NC_004682.1 + 48240 0.67 0.880019
Target:  5'- gCCAGCcGCGACaccuugGUCauugGCGggUCCGCa -3'
miRNA:   3'- -GGUCGaUGCUGcaa---CAG----CGUa-AGGCG- -5'
18674 5' -50.9 NC_004682.1 + 33474 0.67 0.872098
Target:  5'- cCCGGCUGcCGcCGUUGcCGCcg-CCaGCg -3'
miRNA:   3'- -GGUCGAU-GCuGCAACaGCGuaaGG-CG- -5'
18674 5' -50.9 NC_004682.1 + 35382 0.68 0.846799
Target:  5'- uCCAGCgugucUACGACG-UGUCuCGggUCCGUc -3'
miRNA:   3'- -GGUCG-----AUGCUGCaACAGcGUa-AGGCG- -5'
18674 5' -50.9 NC_004682.1 + 24652 0.68 0.845035
Target:  5'- aCCAGCaccgcguucgcgGgGACGUUGUUGCcg-CCGUu -3'
miRNA:   3'- -GGUCGa-----------UgCUGCAACAGCGuaaGGCG- -5'
18674 5' -50.9 NC_004682.1 + 15609 0.68 0.83334
Target:  5'- aCCGGCUcccgagaGCGuCGUUGUCuGCGacaaguucgaucaUCCGCa -3'
miRNA:   3'- -GGUCGA-------UGCuGCAACAG-CGUa------------AGGCG- -5'
18674 5' -50.9 NC_004682.1 + 48695 0.69 0.779995
Target:  5'- aCCGuGCgaccuCGAUGUUGUCuCGaUCCGCg -3'
miRNA:   3'- -GGU-CGau---GCUGCAACAGcGUaAGGCG- -5'
18674 5' -50.9 NC_004682.1 + 26728 0.7 0.748729
Target:  5'- -aAGCUGCucGACGgcugGUCGUucaUCCGCa -3'
miRNA:   3'- ggUCGAUG--CUGCaa--CAGCGua-AGGCG- -5'
18674 5' -50.9 NC_004682.1 + 18212 0.7 0.738043
Target:  5'- uCCGGUaa-GGCGUUGaUCGCAgggUUCGCc -3'
miRNA:   3'- -GGUCGaugCUGCAAC-AGCGUa--AGGCG- -5'
18674 5' -50.9 NC_004682.1 + 25917 0.71 0.694304
Target:  5'- cCCAGCcagacgcACGGCGcgGUUGCGccUCCGCc -3'
miRNA:   3'- -GGUCGa------UGCUGCaaCAGCGUa-AGGCG- -5'
18674 5' -50.9 NC_004682.1 + 25263 0.72 0.649556
Target:  5'- gCCAGCUugGACGcUGUUGagugCgGCg -3'
miRNA:   3'- -GGUCGAugCUGCaACAGCguaaGgCG- -5'
18674 5' -50.9 NC_004682.1 + 15339 0.72 0.638299
Target:  5'- -aGGCgACGACGccGUCGUGcUCCGCa -3'
miRNA:   3'- ggUCGaUGCUGCaaCAGCGUaAGGCG- -5'
18674 5' -50.9 NC_004682.1 + 49617 0.73 0.582131
Target:  5'- -gAGCUACGGCGUcgagCGCuacuuggUCCGCg -3'
miRNA:   3'- ggUCGAUGCUGCAaca-GCGua-----AGGCG- -5'
18674 5' -50.9 NC_004682.1 + 33566 0.73 0.57099
Target:  5'- cCCAGCagaGCGcCGUUGUCGCcgaccaUCUGCu -3'
miRNA:   3'- -GGUCGa--UGCuGCAACAGCGua----AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.