miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18675 5' -61.9 NC_004682.1 + 20284 0.66 0.39782
Target:  5'- cGugGCCGugaagcccuCCGUC-GUGCGGUCgaccCGCa -3'
miRNA:   3'- -CugCGGC---------GGCAGaCGCGCCAGga--GCG- -5'
18675 5' -61.9 NC_004682.1 + 3028 0.66 0.395202
Target:  5'- aGCGCCGCCGcCcGCGCccagaagucgaucaGGUucaugcCCUUGCc -3'
miRNA:   3'- cUGCGGCGGCaGaCGCG--------------CCA------GGAGCG- -5'
18675 5' -61.9 NC_004682.1 + 25848 0.66 0.379733
Target:  5'- uGCGCCGCuCGUCcgggGUGCuggccuuGGUCCacUCGUc -3'
miRNA:   3'- cUGCGGCG-GCAGa---CGCG-------CCAGG--AGCG- -5'
18675 5' -61.9 NC_004682.1 + 29417 0.66 0.372152
Target:  5'- --gGCCGCUggaagGUCUaCGCGGUCCaCGUc -3'
miRNA:   3'- cugCGGCGG-----CAGAcGCGCCAGGaGCG- -5'
18675 5' -61.9 NC_004682.1 + 29586 0.66 0.36385
Target:  5'- -cUGUCGUCGUCaGCGaCGGUCa-CGCg -3'
miRNA:   3'- cuGCGGCGGCAGaCGC-GCCAGgaGCG- -5'
18675 5' -61.9 NC_004682.1 + 8690 0.66 0.36385
Target:  5'- -uUGCCGCUGUCcuUGC-UGG-CCUUGCg -3'
miRNA:   3'- cuGCGGCGGCAG--ACGcGCCaGGAGCG- -5'
18675 5' -61.9 NC_004682.1 + 43089 0.66 0.355677
Target:  5'- cACGCCGaCG-CUGUGCGcGUacggCCUUGCg -3'
miRNA:   3'- cUGCGGCgGCaGACGCGC-CA----GGAGCG- -5'
18675 5' -61.9 NC_004682.1 + 18796 0.66 0.355677
Target:  5'- uGCGCUGCUGgagggCUGCcuucGCGG-CCUUGUc -3'
miRNA:   3'- cUGCGGCGGCa----GACG----CGCCaGGAGCG- -5'
18675 5' -61.9 NC_004682.1 + 41949 0.67 0.347635
Target:  5'- uGCGCgGCCaG-CUcGCGCGGUCUgUGCu -3'
miRNA:   3'- cUGCGgCGG-CaGA-CGCGCCAGGaGCG- -5'
18675 5' -61.9 NC_004682.1 + 27593 0.67 0.339723
Target:  5'- cACGCCGCCGUCgaUGacaaGCGGcaccaUCCaaGCc -3'
miRNA:   3'- cUGCGGCGGCAG--ACg---CGCC-----AGGagCG- -5'
18675 5' -61.9 NC_004682.1 + 46353 0.67 0.339723
Target:  5'- aGC-CCGCCGggUGCGaGGgaacgCCUCGCg -3'
miRNA:   3'- cUGcGGCGGCagACGCgCCa----GGAGCG- -5'
18675 5' -61.9 NC_004682.1 + 27405 0.68 0.305025
Target:  5'- gGugGCCacgggcggcacaaucGCCGUCgGCGCacuggcGUUCUCGCu -3'
miRNA:   3'- -CugCGG---------------CGGCAGaCGCGc-----CAGGAGCG- -5'
18675 5' -61.9 NC_004682.1 + 35183 0.68 0.295019
Target:  5'- gGugGCCgGCgGUgUGCGcCGGUCagCGCg -3'
miRNA:   3'- -CugCGG-CGgCAgACGC-GCCAGgaGCG- -5'
18675 5' -61.9 NC_004682.1 + 33488 0.68 0.288029
Target:  5'- -uUGCCGCCGccagcggcCUGCuGCGGggccagCUUCGCg -3'
miRNA:   3'- cuGCGGCGGCa-------GACG-CGCCa-----GGAGCG- -5'
18675 5' -61.9 NC_004682.1 + 17444 0.71 0.165537
Target:  5'- uGACGCCGUCGagggUCUGCGagaGGcCCuucaUCGCg -3'
miRNA:   3'- -CUGCGGCGGC----AGACGCg--CCaGG----AGCG- -5'
18675 5' -61.9 NC_004682.1 + 8647 1.11 0.000172
Target:  5'- uGACGCCGCCGUCUGCGCGGUCCUCGCg -3'
miRNA:   3'- -CUGCGGCGGCAGACGCGCCAGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.