miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18676 3' -55.9 NC_004682.1 + 12441 0.66 0.688342
Target:  5'- --uGGACUUCGGUGAggaaCAGgGCGGCg- -3'
miRNA:   3'- cguUCUGGAGCCGCU----GUUgUGCCGga -5'
18676 3' -55.9 NC_004682.1 + 4696 0.66 0.688342
Target:  5'- ---cGAUCUCGGCaGCgAGCGUGGCCUc -3'
miRNA:   3'- cguuCUGGAGCCGcUG-UUGUGCCGGA- -5'
18676 3' -55.9 NC_004682.1 + 3213 0.66 0.688342
Target:  5'- gGCAucACCUaCGuCGGCGGCGCGGCa- -3'
miRNA:   3'- -CGUucUGGA-GCcGCUGUUGUGCCGga -5'
18676 3' -55.9 NC_004682.1 + 28294 0.66 0.688342
Target:  5'- aGCAGGGCgUUGGCcuCGGCAUGGaCUg -3'
miRNA:   3'- -CGUUCUGgAGCCGcuGUUGUGCCgGA- -5'
18676 3' -55.9 NC_004682.1 + 16579 0.66 0.677444
Target:  5'- cGUAGGGCgUCGGUGAacuCACGGaCg -3'
miRNA:   3'- -CGUUCUGgAGCCGCUguuGUGCCgGa -5'
18676 3' -55.9 NC_004682.1 + 35396 0.66 0.677444
Target:  5'- cGCGGGAguCCUCGaUGACGaagGCAcCGGCCc -3'
miRNA:   3'- -CGUUCU--GGAGCcGCUGU---UGU-GCCGGa -5'
18676 3' -55.9 NC_004682.1 + 18120 0.66 0.677444
Target:  5'- cGCAGGGCgCgUCGG--ACAuCGCGGCCa -3'
miRNA:   3'- -CGUUCUG-G-AGCCgcUGUuGUGCCGGa -5'
18676 3' -55.9 NC_004682.1 + 47658 0.66 0.677444
Target:  5'- uGCGGGACCg-GGCGAUGACuuuGCCc -3'
miRNA:   3'- -CGUUCUGGagCCGCUGUUGugcCGGa -5'
18676 3' -55.9 NC_004682.1 + 21334 0.66 0.677444
Target:  5'- aGUGAGACCgccuUCGGCGGCucC-UGGCUg -3'
miRNA:   3'- -CGUUCUGG----AGCCGCUGuuGuGCCGGa -5'
18676 3' -55.9 NC_004682.1 + 45662 0.66 0.670884
Target:  5'- aCGGGugCUUGGCGuuccaagucucggcCAGCACgugGGCCUg -3'
miRNA:   3'- cGUUCugGAGCCGCu-------------GUUGUG---CCGGA- -5'
18676 3' -55.9 NC_004682.1 + 30626 0.66 0.666503
Target:  5'- cGCcuGGAUCaucgucCGGUcgcccGACAGCGCGGCCa -3'
miRNA:   3'- -CGu-UCUGGa-----GCCG-----CUGUUGUGCCGGa -5'
18676 3' -55.9 NC_004682.1 + 16943 0.66 0.666503
Target:  5'- aCGGGAUCaaGGCGGCAGC-CGaaGCCUg -3'
miRNA:   3'- cGUUCUGGagCCGCUGUUGuGC--CGGA- -5'
18676 3' -55.9 NC_004682.1 + 39888 0.66 0.655529
Target:  5'- cCGAGGCaUCgGGCGGCGcgcuauACGCGGUCg -3'
miRNA:   3'- cGUUCUGgAG-CCGCUGU------UGUGCCGGa -5'
18676 3' -55.9 NC_004682.1 + 26466 0.66 0.648935
Target:  5'- cGUucGACC-CGGCGACGugGaagcagauccaggaGGCCg -3'
miRNA:   3'- -CGuuCUGGaGCCGCUGUugUg-------------CCGGa -5'
18676 3' -55.9 NC_004682.1 + 21935 0.66 0.644535
Target:  5'- cCAAGAUCUgGGagaccagGGCcACACGGCCc -3'
miRNA:   3'- cGUUCUGGAgCCg------CUGuUGUGCCGGa -5'
18676 3' -55.9 NC_004682.1 + 31153 0.66 0.633529
Target:  5'- aGCAGGACuaCUgGGCGA--GCAaGGCCg -3'
miRNA:   3'- -CGUUCUG--GAgCCGCUguUGUgCCGGa -5'
18676 3' -55.9 NC_004682.1 + 43169 0.66 0.633529
Target:  5'- cGCAAGGCCguacGCGcACAGCGuCGGCg- -3'
miRNA:   3'- -CGUUCUGGagc-CGC-UGUUGU-GCCGga -5'
18676 3' -55.9 NC_004682.1 + 48400 0.67 0.622521
Target:  5'- gGCGAcGACaaCGGCGACGGCAUcGUCa -3'
miRNA:   3'- -CGUU-CUGgaGCCGCUGUUGUGcCGGa -5'
18676 3' -55.9 NC_004682.1 + 41177 0.67 0.622521
Target:  5'- aGC-AGAuCCUCGGCGACcugaucgcGACGaaGCCg -3'
miRNA:   3'- -CGuUCU-GGAGCCGCUG--------UUGUgcCGGa -5'
18676 3' -55.9 NC_004682.1 + 32593 0.67 0.622521
Target:  5'- --cGGAUCUCGGCGuCAGCcgccucaugccaGCgGGCCUu -3'
miRNA:   3'- cguUCUGGAGCCGCuGUUG------------UG-CCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.