miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18676 3' -55.9 NC_004682.1 + 28881 0.67 0.61592
Target:  5'- cGCGGGACCagguucgcuucgguuUCGGUG-CAGgcUugGGCCg -3'
miRNA:   3'- -CGUUCUGG---------------AGCCGCuGUU--GugCCGGa -5'
18676 3' -55.9 NC_004682.1 + 12697 0.67 0.600541
Target:  5'- aCAGGGCCaaCGGCGGCuuCGCGaCCg -3'
miRNA:   3'- cGUUCUGGa-GCCGCUGuuGUGCcGGa -5'
18676 3' -55.9 NC_004682.1 + 38019 0.67 0.600541
Target:  5'- -aGAGGCCcagCGGCuGAUu-CACGGCCc -3'
miRNA:   3'- cgUUCUGGa--GCCG-CUGuuGUGCCGGa -5'
18676 3' -55.9 NC_004682.1 + 6271 0.67 0.578669
Target:  5'- gGCucuGGGCCUggaGGCGGCGaaGCGCuGGCUg -3'
miRNA:   3'- -CGu--UCUGGAg--CCGCUGU--UGUG-CCGGa -5'
18676 3' -55.9 NC_004682.1 + 47140 0.67 0.578669
Target:  5'- uGCGGaugauGGCUUCGGCGAUGGCuccgaugUGGCCUc -3'
miRNA:   3'- -CGUU-----CUGGAGCCGCUGUUGu------GCCGGA- -5'
18676 3' -55.9 NC_004682.1 + 26011 0.67 0.578669
Target:  5'- cGCAGGACC-CGGCuggaggcGCAAC-CGcGCCg -3'
miRNA:   3'- -CGUUCUGGaGCCGc------UGUUGuGC-CGGa -5'
18676 3' -55.9 NC_004682.1 + 1863 0.67 0.567795
Target:  5'- -gGGGGCCUCGGUGGgGACGgagaucaGGCUg -3'
miRNA:   3'- cgUUCUGGAGCCGCUgUUGUg------CCGGa -5'
18676 3' -55.9 NC_004682.1 + 10714 0.67 0.567795
Target:  5'- gGCcuAGACCUCGaUGACGACuCGGCa- -3'
miRNA:   3'- -CGu-UCUGGAGCcGCUGUUGuGCCGga -5'
18676 3' -55.9 NC_004682.1 + 33664 0.67 0.564543
Target:  5'- uGCAGGACgCcuacgagcagauggUCGGCGACAacggcgcucuGCugGGCg- -3'
miRNA:   3'- -CGUUCUG-G--------------AGCCGCUGU----------UGugCCGga -5'
18676 3' -55.9 NC_004682.1 + 9811 0.68 0.555894
Target:  5'- aCAAGAUCuUCGGCGGCGcgugggaGCAagcgaugcgcgUGGCCUa -3'
miRNA:   3'- cGUUCUGG-AGCCGCUGU-------UGU-----------GCCGGA- -5'
18676 3' -55.9 NC_004682.1 + 27468 0.68 0.546211
Target:  5'- cGC-GGACCUC-GCGACGGacaACGGCg- -3'
miRNA:   3'- -CGuUCUGGAGcCGCUGUUg--UGCCGga -5'
18676 3' -55.9 NC_004682.1 + 34189 0.68 0.546211
Target:  5'- ---cGAUCUgGGCuGACAACGCGGUg- -3'
miRNA:   3'- cguuCUGGAgCCG-CUGUUGUGCCGga -5'
18676 3' -55.9 NC_004682.1 + 5223 0.68 0.535517
Target:  5'- cGCGGGccuugGCCUCGGagaugcccGCAGCACGcGCCa -3'
miRNA:   3'- -CGUUC-----UGGAGCCgc------UGUUGUGC-CGGa -5'
18676 3' -55.9 NC_004682.1 + 42259 0.68 0.53126
Target:  5'- aCGGGGCCgggguagccagcgCGGUGcauccGCAGCACGGCUg -3'
miRNA:   3'- cGUUCUGGa------------GCCGC-----UGUUGUGCCGGa -5'
18676 3' -55.9 NC_004682.1 + 36629 0.68 0.529136
Target:  5'- gGCAAG-CCgcagggCGGCGAguccaagccucccauCAACGCGGCg- -3'
miRNA:   3'- -CGUUCuGGa-----GCCGCU---------------GUUGUGCCGga -5'
18676 3' -55.9 NC_004682.1 + 11353 0.68 0.524897
Target:  5'- cGCGAGuccuUCUCGGCGAUcu-GCGGCUc -3'
miRNA:   3'- -CGUUCu---GGAGCCGCUGuugUGCCGGa -5'
18676 3' -55.9 NC_004682.1 + 7434 0.68 0.524897
Target:  5'- aCGGGGCCgcagaguuccgCGaGCGAgAGCGCGGCUg -3'
miRNA:   3'- cGUUCUGGa----------GC-CGCUgUUGUGCCGGa -5'
18676 3' -55.9 NC_004682.1 + 32692 0.68 0.524897
Target:  5'- gGCAGGACCgcccUGGCcGCuuCGCgGGCCUu -3'
miRNA:   3'- -CGUUCUGGa---GCCGcUGuuGUG-CCGGA- -5'
18676 3' -55.9 NC_004682.1 + 45819 0.68 0.524897
Target:  5'- -aGAG-CCUCaGCGACcGCGuCGGCCa -3'
miRNA:   3'- cgUUCuGGAGcCGCUGuUGU-GCCGGa -5'
18676 3' -55.9 NC_004682.1 + 2745 0.69 0.493547
Target:  5'- ---cGACCUuCGGgGACAGCGCGucguaggcaGCCUg -3'
miRNA:   3'- cguuCUGGA-GCCgCUGUUGUGC---------CGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.